A B C D E F G J K M O P Q R S T U W
adiv-package | Analysis of Diversity |
abgaptree | Hierarchical Partitioning of Evolutionary and Ecological Patterns in the Organization of Phylogenetically-Structured Species Assemblages |
abgdivparam | Apportionment of Parametric Indices of Diversity |
abgevodivparam | Apportionment of Parametric Indices of Phylogenetic Diversity |
adiv | Analysis of Diversity |
apd | Hierarchical Partitioning of Evolutionary and Ecological Patterns in the Organization of Phylogenetically-Structured Species Assemblages |
aptree | Hierarchical Partitioning of Evolutionary and Ecological Patterns in the Organization of Phylogenetically-Structured Species Assemblages |
barp4d | Plots for phylogenetic tree and data |
batcomm | Bat Abundance and Phylogeny Along a Disturbance Gradient in a Neotropical Rainforest |
betastatjac | Multiple-Site Dissimilarity Measure for Species Presence/Absence Data |
betastatsor | Multiple-Site Dissimilarity Measure for Species Presence/Absence Data |
betaTreeUniqueness | Plot-to-plot functional or phylogenetic dissimilarity and uniqueness |
betaUniqueness | Algorithmic index of plot-to-plot functional (or phylogenetic) dissimilarity and uniqueness |
birdData | Avian Communities along Successional Forest Gradients |
CFbinary | Matrices of Intra- and Inter-Specific Similarities |
CFprop | Matrices of Intra- and Inter-Specific Similarities |
crossdpcoa_maineffect | Crossed-DPCoA |
crossdpcoa_version1 | Crossed-DPCoA |
crossdpcoa_version2 | Crossed-DPCoA |
dbMANOVAspecies | Indicator species analysis in the framework of multivariate analysis of variance |
dbMANOVAspecies_pairwise | Indicator species analysis in the framework of multivariate analysis of variance |
decdiv | Decomposition of trait-based diversity along the nodes of a phylogenetic tree |
discomQE | Quadratic Entropy |
dislptransport | Algorithmic index of plot-to-plot functional (or phylogenetic) dissimilarity |
dissABC | Phylogenetic and Functional Similarity between Communities |
dissRicotta | Plot-to-Plot Functional or Phylogenetic Dissimilarity |
distinctAb | Abundance-based measures of species' rarity, functional or phylogenetic distinctiveness and functional or phylogenetic effective originality |
distinctDis | Dissimilarity-based Species' Originality |
distinctTopo | Topology-based Species' Originality |
distinctTree | Tree-based Species' Originality |
distinctUltra | Ultrametric Tree-based Species' Originality |
distMS | Marczewski-Steinhaus Coefficient |
divparam | Parametric Indices of Species Diversity |
DJac | Functional Dissimilarity Measures for Presence-Absence Data |
dotp4d | Plots for phylogenetic tree and data |
DP | Plot-to-plot functional or phylogenetic dissimilarity |
dsimcom | Functional or Phylogenetic Similarity between Species and Communities |
dsimFun | Functional or Phylogenetic Similarity between Species and Communities |
dsimTaxo | Functional or Phylogenetic Similarity between Species and Communities |
dsimTree | Functional or Phylogenetic Similarity between Species and Communities |
dspca | Double similarity principal component analysis |
EH | Faith Phylogenetic Diversity |
EqRao | Apportionment of Diversity |
EqRS | Apportionment of Diversity |
EqRSintra | Apportionment of Diversity |
eveparam | Parametric Indices of Species Evenness |
evoCA | Evolutionary Correspondence Analysis |
evodiss | Pair-wise Phylogenetic Dissimilarities between Communities |
evodiss_family | A Family of Indices Dedicated to Pair-wise Phylogenetic Dissimilarities between Communities |
evodiss_ternaryplot | A Family of Indices Dedicated to Pair-wise Phylogenetic Dissimilarities between Communities |
evodiv | Indices of Phylogenetic Diversity |
evodivparam | Parametric Indices of Phylogenetic Diversity |
evoeveparam | Parametric Indices of Phylogenetic evenness |
evoNSCA | Evolutionary Non-Symmetric Correspondence Analysis |
evopcachord | Evolutionary Principal Component analyses |
evopcahellinger | Evolutionary Principal Component analyses |
evouniparam | Parametric Indices of Phylogenetic Uniqueness |
FPdivparam | Parametric Indices of Functional and Phylogenetic Diversity |
FunImbalance | Indices of functional imbalance |
generalized_Tradidiss | Plot-to-plot dissimilarity taking account of functional dissimilarities between species |
gridp4d | Plots for phylogenetic tree and data |
Jac | Functional Dissimilarity Measures for Presence-Absence Data |
K | Indices K, Kstar and Kw of Phylogenetic Signal |
Kstar | Indices K, Kstar and Kw of Phylogenetic Signal |
Kw | Indices K, Kstar and Kw of Phylogenetic Signal |
multiCFbinary | Matrices of Intra- and Inter-Specific Similarities |
multiCFprop | Matrices of Intra- and Inter-Specific Similarities |
optimEH | Nee and May's Optimizing Process |
orisaved | Maximal or Minimal Amount of Originality Saved under Optimal Conditions |
PADDis | Functional Dissimilarity Measures for Presence-Absence Data |
pIa | Hierarchical Partitioning of Evolutionary and Ecological Patterns in the Organization of Phylogenetically-Structured Species Assemblages |
plot.abgdivparam | Apportionment of Parametric Indices of Diversity |
plot.abgevodivparam | Apportionment of Parametric Indices of Phylogenetic Diversity |
plot.aptree | Hierarchical Partitioning of Evolutionary and Ecological Patterns in the Organization of Phylogenetically-Structured Species Assemblages |
plot.decdiv | Decomposition of trait-based diversity along the nodes of a phylogenetic tree |
plot.divparam | Parametric Indices of Species Diversity |
plot.dspca | Double similarity principal component analysis |
plot.eveparam | Parametric Indices of Species Evenness |
plot.evoCA | Evolutionary Correspondence Analysis |
plot.evodivparam | Parametric Indices of Phylogenetic Diversity |
plot.evoeveparam | Parametric Indices of Phylogenetic evenness |
plot.evouniparam | Parametric Indices of Phylogenetic Uniqueness |
plot.FPdivparam | Parametric Indices of Functional and Phylogenetic Diversity |
plot.phylo4d | Plots for phylogenetic tree and data |
plot.rlqESLTP | Linking Patterns in Phylogeny, Traits, Abiotic Variables and Space |
plot.rtestaptree | Hierarchical Partitioning of Evolutionary and Ecological Patterns in the Organization of Phylogenetically-Structured Species Assemblages |
qDT | Mean Diversity along a Phylogenetic Tree |
QE | Quadratic Entropy |
qHdiv | Biodiversity Measure that Includes Consistent Interspecific and Intraspecific Components |
randEH | Amount of Evolutionary History Preserved when Random Species are Saved |
rare_Rao | Functional Rarefaction for Species Abundance Data |
RDMCCP16 | Theoretical Data Set used in Ricotta et al. (2016) |
Rentropy | Pavoine et al. (2017) functional or phylogenetic entropy |
rlqESLTP | Linking Patterns in Phylogeny, Traits, Abiotic Variables and Space |
rockfish | Rockfish Phylogenetic Diversity in Southern California Bight |
RP15EI | Theoretical Data Set used in Ricotta and Pavoine (2015) in Ecological Indicators |
RP15JVS | Theoretical Data Set used in Ricotta and Pavoine (2015) in Journal of Vegetation Science |
RPP16EE | Theoretical Data Set used in Ricotta et al. (2016) in Ecology and Evolution |
rtestaptree | Hierarchical Partitioning of Evolutionary and Ecological Patterns in the Organization of Phylogenetically-Structured Species Assemblages |
rtestdecdiv | Decomposition of trait-based diversity along the nodes of a phylogenetic tree |
rtestEqRao | Apportionment of Diversity |
rtestEqRS | Apportionment of Diversity |
rtestEqRSintra | Apportionment of Diversity |
rtestwapqe | Apportionment of Diversity |
RutorGlacier | Functional and phylogenetic composition of plant communities along a primary succession on glacial deposits. |
speciesdiv | Indices of Species Diversity |
specieseve | Indices of Species Evenvess |
SQ | Functional or Phylogenetic Similarity between Species and Communities |
summary.dbMANOVAspecies_pairwise | Indicator species analysis in the framework of multivariate analysis of variance |
summary.rlqESLTP | Linking Patterns in Phylogeny, Traits, Abiotic Variables and Space |
tecAptree | Hierarchical Partitioning of Evolutionary and Ecological Patterns in the Organization of Phylogenetically-Structured Species Assemblages |
treeUniqueness | Community-level phylogenetic (or functional) redundancy |
twoHmax | Maximization of the Diversity Index TwoH |
uniqueness | Functional Uniqueness and Functional Redundancy of Biological Communities |
wapqe | Apportionment of Diversity |