Family Age-at-Onset Data Simulation and Penetrance Estimation
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Documentation for package ‘FamEvent’ version 3.1
Help Pages
| FamEvent-package | Family age-at-onset data simulation and penetrance estimation |
| carrierprob | Compute mutation carrier probabilities for individuals with missing gentoypes |
| fampower | Simulation-based power calculation for genetic effect |
| LSfam | Ontario Lynch Syndrom families |
| penetrance | Penetrance function and confidence intervals |
| penetrance_cmp | Estimating Penetrances for competing risk models and confidence intervals |
| penmodel | Fit a penetrance model |
| penmodelEM | EM algorithm for estimating the penetrance model with missing genotypes |
| penmodel_cmp | Fit a penetrance model for competing risks data |
| penplot | Plot penetrance functions |
| penplot_cmp | Plot penetrance functions from competing risk models |
| plot.penmodel | Plot method for 'penmodel' |
| plot.penmodel_cmp | Plot method for 'penmodel_cmp' |
| plot.simfam | Plot method for 'simfam' or Plot pedigrees |
| plot.simfam_cmp | Plot method for 'simfam_cmp' or Plot pedigrees |
| print.penmodel | Print method for 'penmodel'. |
| print.penmodel_cmp | Print method for 'penmodel_cmp'. |
| print.summary.penmodel | Print method for 'summary.penmodel' of a fitted penetrance model. |
| print.summary.penmodel_cmp | Print method for 'summary.penmodel_cmp' of a fitted competing risks penetrance model. |
| simfam | Generate familial time-to-event data |
| simfam2 | Generate familial time-to-event data with kinship or IBD matrices. |
| simfam_cmp | Generate familial competing risks data |
| summary.penmodel | Summary method for class 'penmodel' |
| summary.penmodel_cmp | Summary method for class 'penmodel_cmp' |
| summary.simfam | Summary method for 'simfam' |
| summary.simfam2 | Summary method for 'simfam2' |
| summary.simfam_cmp | Summary method for 'simfam_cmp' |