FamEvent-package |
Family age-at-onset data simulation and penetrance estimation |
carrierprob |
Compute mutation carrier probabilities for individuals with missing gentoypes |
fampower |
Simulation-based power calculation for genetic effect |
LSfam |
Ontario Lynch Syndrom families |
penetrance |
Penetrance function and confidence intervals |
penetrance_cmp |
Estimating Penetrances for competing risk models and confidence intervals |
penmodel |
Fit a penetrance model |
penmodelEM |
EM algorithm for estimating the penetrance model with missing genotypes |
penmodel_cmp |
Fit a penetrance model for competing risks data |
penplot |
Plot penetrance functions |
penplot_cmp |
Plot penetrance functions from competing risk models |
plot.penmodel |
Plot method for 'penmodel' |
plot.penmodel_cmp |
Plot method for 'penmodel_cmp' |
plot.simfam |
Plot method for 'simfam' or Plot pedigrees |
plot.simfam2 |
Plot method for 'simfam2' or Plot pedigrees |
plot.simfam_cmp |
Plot method for 'simfam_cmp' or Plot pedigrees |
plot.simfam_tvc |
Plot method for 'simfam_tvc' or Plot pedigrees |
print.penmodel |
Print method for 'penmodel'. |
print.penmodel_cmp |
Print method for 'penmodel_cmp'. |
print.summary.penmodel |
Print method for 'summary.penmodel' of a fitted penetrance model. |
print.summary.penmodel_cmp |
Print method for 'summary.penmodel_cmp' of a fitted competing risks penetrance model. |
simfam |
Generate familial time-to-event data |
simfam2 |
Generate familial time-to-event data with Kinship or IBD matrices. |
simfam_cmp |
Generate familial competing risks data |
simfam_tvc |
Generate familial time-to-event data with a time-varying covariate |
summary.penmodel |
Summary method for class 'penmodel' |
summary.penmodel_cmp |
Summary method for class 'penmodel_cmp' |
summary.simfam |
Summary method for 'simfam' |
summary.simfam2 |
Summary method for 'simfam2' |
summary.simfam_cmp |
Summary method for 'simfam_cmp' |
summary.simfam_tvc |
Summary method for 'simfam_tvc' |