rioja-package | Analysis of Quaternary Science Data |
aber | Abernethy Forest pollen data |
addClustZone | Plot a stratigraphic diagram |
addZone | Plot a stratigraphic diagram |
bstick | Constrained hierarchical clustering |
bstick.chclust | Constrained hierarchical clustering |
chclust | Constrained hierarchical clustering |
coef.IKFA | Imbrie & Kipp Factor Analysis |
coef.LWR | Weighted averaging (LWR) regression and calibration |
coef.MLRC | Palaeoenvironmental reconstruction using Maximum Likelihood Response Surfaces |
coef.MLRC2 | Palaeoenvironmental reconstruction using Maximum Likelihood Response Surfaces |
coef.MR | Multiple regression |
coef.WA | Weighted averaging (WA) regression and calibration |
coef.WAPLS | Weighted averaging partial least squares (WAPLS) regression and calibration |
communality | Imbrie & Kipp Factor Analysis |
compare.datasets | Compare datasets for matching variables (species) |
crossval | Palaeoecological transfer functions |
crossval.default | Palaeoecological transfer functions |
crossval.IKFA | Imbrie & Kipp Factor Analysis |
crossval.LWR | Weighted averaging (LWR) regression and calibration |
crossval.MAT | Palaeoenvironmental reconstruction using the Modern Analogue Technique (MAT) |
crossval.MLRC | Palaeoenvironmental reconstruction using Maximum Likelihood Response Surfaces |
crossval.MR | Multiple regression |
crossval.WA | Weighted averaging (WA) regression and calibration |
crossval.WAPLS | Weighted averaging partial least squares (WAPLS) regression and calibration |
dot | Utility functions. |
dot.data.frame | Utility functions. |
dot.default | Utility functions. |
dummy2factor | Utility functions. |
figCnvt | Graphic utilities. |
fitted.IKFA | Imbrie & Kipp Factor Analysis |
fitted.LWR | Weighted averaging (LWR) regression and calibration |
fitted.MAT | Palaeoenvironmental reconstruction using the Modern Analogue Technique (MAT) |
fitted.MLRC | Palaeoenvironmental reconstruction using Maximum Likelihood Response Surfaces |
fitted.MLRC2 | Palaeoenvironmental reconstruction using Maximum Likelihood Response Surfaces |
fitted.MR | Multiple regression |
fitted.WA | Weighted averaging (WA) regression and calibration |
fitted.WAPLS | Weighted averaging partial least squares (WAPLS) regression and calibration |
Hill.N2 | Utility functions. |
hulls | Graphic utilities. |
IK | Imbrie and Kipp foraminifera data |
IKFA | Imbrie & Kipp Factor Analysis |
IKFA.fit | Imbrie & Kipp Factor Analysis |
inkspot | Two-way ordered bubble plot of a species by sites data table |
interp.dataset | Interpolate a dataset |
LWR | Weighted averaging (LWR) regression and calibration |
LWR.fit | Weighted averaging (LWR) regression and calibration |
make.dummy | Utility functions. |
MAT | Palaeoenvironmental reconstruction using the Modern Analogue Technique (MAT) |
Merge | Merges two or more data frames on the basis of common column names. |
MLRC | Palaeoenvironmental reconstruction using Maximum Likelihood Response Surfaces |
MLRC.fit | Palaeoenvironmental reconstruction using Maximum Likelihood Response Surfaces |
MLRC2 | Palaeoenvironmental reconstruction using Maximum Likelihood Response Surfaces |
MLRC2.fit | Palaeoenvironmental reconstruction using Maximum Likelihood Response Surfaces |
MR | Multiple regression |
MR.fit | Multiple regression |
paldist | Palaeoenvironmental reconstruction using the Modern Analogue Technique (MAT) |
paldist2 | Palaeoenvironmental reconstruction using the Modern Analogue Technique (MAT) |
performance | Palaeoecological transfer functions |
performance.default | Palaeoecological transfer functions |
performance.IKFA | Imbrie & Kipp Factor Analysis |
performance.LWR | Weighted averaging (LWR) regression and calibration |
performance.MAT | Palaeoenvironmental reconstruction using the Modern Analogue Technique (MAT) |
performance.MLRC | Palaeoenvironmental reconstruction using Maximum Likelihood Response Surfaces |
performance.MLRC2 | Palaeoenvironmental reconstruction using Maximum Likelihood Response Surfaces |
performance.MR | Multiple regression |
performance.WA | Weighted averaging (WA) regression and calibration |
performance.WAPLS | Weighted averaging partial least squares (WAPLS) regression and calibration |
plot.chclust | Constrained hierarchical clustering |
plot.compare.datasets | Compare datasets for matching variables (species) |
plot.IKFA | Imbrie & Kipp Factor Analysis |
plot.LWR | Weighted averaging (LWR) regression and calibration |
plot.MAT | Palaeoenvironmental reconstruction using the Modern Analogue Technique (MAT) |
plot.MLRC | Palaeoenvironmental reconstruction using Maximum Likelihood Response Surfaces |
plot.MR | Multiple regression |
plot.randomPTF | Random transfer functions to calculate variable importance |
plot.WA | Weighted averaging (WA) regression and calibration |
plot.WAPLS | Weighted averaging partial least squares (WAPLS) regression and calibration |
Ponds | Southeast England ponds and pools diatom and water chemistry dataset. |
predict.IKFA | Imbrie & Kipp Factor Analysis |
predict.LWR | Weighted averaging (LWR) regression and calibration |
predict.MAT | Palaeoenvironmental reconstruction using the Modern Analogue Technique (MAT) |
predict.MLRC | Palaeoenvironmental reconstruction using Maximum Likelihood Response Surfaces |
predict.MLRC2 | Palaeoenvironmental reconstruction using Maximum Likelihood Response Surfaces |
predict.MR | Multiple regression |
predict.WA | Weighted averaging (WA) regression and calibration |
predict.WAPLS | Weighted averaging partial least squares (WAPLS) regression and calibration |
print.IKFA | Imbrie & Kipp Factor Analysis |
print.LWR | Weighted averaging (LWR) regression and calibration |
print.MAT | Palaeoenvironmental reconstruction using the Modern Analogue Technique (MAT) |
print.MLRC | Palaeoenvironmental reconstruction using Maximum Likelihood Response Surfaces |
print.MLRC2 | Palaeoenvironmental reconstruction using Maximum Likelihood Response Surfaces |
print.MR | Multiple regression |
print.randomPTF | Random transfer functions to calculate variable importance |
print.WA | Weighted averaging (WA) regression and calibration |
print.WAPLS | Weighted averaging partial least squares (WAPLS) regression and calibration |
rand.t.test | Palaeoecological transfer functions |
rand.t.test.default | Palaeoecological transfer functions |
rand.t.test.IKFA | Imbrie & Kipp Factor Analysis |
rand.t.test.WA | Weighted averaging (WA) regression and calibration |
rand.t.test.WAPLS | Weighted averaging partial least squares (WAPLS) regression and calibration |
randomPTF | Random transfer functions to calculate variable importance |
residuals.IKFA | Imbrie & Kipp Factor Analysis |
residuals.LWR | Weighted averaging (LWR) regression and calibration |
residuals.MAT | Palaeoenvironmental reconstruction using the Modern Analogue Technique (MAT) |
residuals.MLRC | Palaeoenvironmental reconstruction using Maximum Likelihood Response Surfaces |
residuals.MLRC2 | Palaeoenvironmental reconstruction using Maximum Likelihood Response Surfaces |
residuals.MR | Multiple regression |
residuals.WA | Weighted averaging (WA) regression and calibration |
residuals.WAPLS | Weighted averaging partial least squares (WAPLS) regression and calibration |
rioja | Analysis of Quaternary Science Data |
RLGH | Diatom stratigraphic data from the Round Loch of Glenhead, Galloway, Southwest Scotland |
screeplot.IKFA | Imbrie & Kipp Factor Analysis |
screeplot.MAT | Palaeoenvironmental reconstruction using the Modern Analogue Technique (MAT) |
screeplot.WAPLS | Weighted averaging partial least squares (WAPLS) regression and calibration |
site.summ | Utility functions. |
sp.summ | Utility functions. |
strat.plot | Plot a stratigraphic diagram |
summary.IKFA | Imbrie & Kipp Factor Analysis |
summary.LWR | Weighted averaging (LWR) regression and calibration |
summary.MAT | Palaeoenvironmental reconstruction using the Modern Analogue Technique (MAT) |
summary.MLRC | Palaeoenvironmental reconstruction using Maximum Likelihood Response Surfaces |
summary.MLRC2 | Palaeoenvironmental reconstruction using Maximum Likelihood Response Surfaces |
summary.MR | Multiple regression |
summary.WA | Weighted averaging (WA) regression and calibration |
summary.WAPLS | Weighted averaging partial least squares (WAPLS) regression and calibration |
SWAP | SWAP surface sediment diatom data and lake-water pH. |
WA | Weighted averaging (WA) regression and calibration |
WA.fit | Weighted averaging (WA) regression and calibration |
WAPLS | Weighted averaging partial least squares (WAPLS) regression and calibration |
WAPLS.fit | Weighted averaging partial least squares (WAPLS) regression and calibration |