add_anchor | A ggproto for drawing anchor points |
add_anno | A ggproto for annotating the symmetry of the starting points |
add_dir_search | A ggproto for drawing directional search points |
add_end | A ggproto for drawing start points |
add_interp | A ggproto for drawing interpolation path |
add_interp_last | A ggproto for drawing finish points |
add_interrupt | A ggproto for annotating the interrupted path |
add_search | A ggproto for drawing search points |
add_space | A ggproto for drawing circle |
add_start | A ggproto for drawing start points |
add_theo | A ggproto for drawing the theoretical basis, if applicable |
bind_random | Bind random bases in the projection bases space |
bind_random_matrix | Bind random bases in the projection bases space as a matrix |
bind_theoretical | Bind the theoretical best record |
boa | Simulated data |
boa5 | Simulated data |
boa6 | Simulated data |
botanical_pal | A customised colour palette based on Australian botanies |
botanical_palettes | A customised colour palette based on Australian botanies |
clean_method | Clean method names |
compute_pca | Plot the PCA projection of the projection bases space |
explore_space_pca | Plot the PCA projection of the projection bases space |
explore_space_tour | Plot the grand tour animation of the bases space in high dimension |
explore_trace_interp | Plot the trace the search progression |
explore_trace_search | Plot the count in each iteration |
flip_sign | Plot the PCA projection of the projection bases space |
format_label | Better label formatting to avoid overlapping |
get_anchor | Extract the anchor points on the geodesic path |
get_basis_matrix | Extract all the bases as a matrix |
get_best | Extract the record with the largest index value |
get_dir_search | Extract directional search points during the optimisation |
get_interp | Extract interpolated records |
get_interp_last | Extract the end point at each interpolation |
get_interrupt | Extract the end point of the interpolation and the target point in the iteration when an interruption happens |
get_search | Extract search points during the optimisation |
get_search_count | Extract the count in each iteration |
get_space_param | Estimate the radius of the background circle based on the randomly generated points |
get_start | Extract the starting records |
get_theo | Extract the theoretical best basis, if applicable |
holes_1d_better | Simulated data |
holes_1d_geo | Simulated data |
holes_2d_better | Simulated data |
holes_2d_better_max_tries | Simulated data |
prep_space_tour | Plot the grand tour animation of the bases space in high dimension |
scale_color_continuous_botanical | continuous scale colour function |
scale_color_discrete_botanical | continuous scale colour function |
scale_fill_continuous_botanical | continuous scale colour function |
scale_fill_discrete_botanical | continuous scale colour function |
theme_fern | A specific theme for trace plots |