Graphical Modelling and Ordination using Copulas

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Documentation for package ‘ecoCopula’ version 1.0.2

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

cgr	Fitting Gaussian copula graphical lasso to co-occurrence data
cord	Model based ordination with Gaussian copulas
fitted.stackedsdm	Fitted values from a stackedsdm object
plot.cgr	Plot graph of direct species associations.
plot.cord	Plots an ordination of latent variables and their corresponding coefficients (biplot).
plot.stackedsdm	Plot residuals of stackedsdm.
predict.stackedsdm	Predictions from a stackedsdm object
print.cgr	Print function for cgr object
print.cord	Print function for cord object
residuals.stackedsdm	Calculate residuals from a stackedsdm object
simulate.cord	Simulates new data from a given cord object
spider	Spider data
stackedsdm	Stacked species regression models, possibly fitted in parallel
summary.cgr	Summary function for cgr object
summary.cord	Summary function for cgr object