Graphical Modelling and Ordination using Copulas

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Documentation for package ‘ecoCopula’ version 1.0.1

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cgr Fitting Gaussian copula graphical lasso to co-occurrence data
cord Model based ordination with Gaussian copulas
fitted.stackedsdm Fitted values from a stackedsdm object
plot.cgr Plot graph of direct species associations.
plot.cord Plots an ordination of latent variables and their corresponding coefficients (biplot).
plot.stackedsdm Plot residuals of stackedsdm.
predict.stackedsdm Predictions from a stackedsdm object
print.cgr Print function for cgr object
print.cord Print function for cord object
residuals.stackedsdm Calculate residuals from a stackedsdm object
simulate.cord Simulates new data from a given cord object
spider Spider data
stackedsdm Stacked species regression models, possibly fitted in parallel
summary.cgr Summary function for cgr object
summary.cord Summary function for cgr object