Analyses of Protein Post-Translational Modifications


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Documentation for package ‘ptm’ version 1.0.1

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.get.exepath Find Full Paths to Executables
.get.url Get Web Resource
aa.at Residue Found at the Requested Position
aa.comp Amino Acid Composition
get.seq Import a Protein Sequence from a Database
gracefully_fail Check that Internet Resource Work Properly and Fail Gracefully When Not
hmeto Human MetO sites oxidized by hydrogen peroxide treatment.
is.at Check Residue a Fixed Position
meto.list List Proteins Found in MetOSite Matching a Keyword
meto.scan Scans a Protein in Search of MetO Sites
meto.search Search for Specific MetO Sites
pairwise.dist Compute Euclidean Distances
saro.dist Compute Distances to the Closest Aromatic Residues
saro.geometry Compute Geometric Parameters of S-Aromatic Motifs
saro.motif Search for S-Aromatic Motifs
xprod Compute Cross Product