R Utilities for GFF Files

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Documentation for package ‘Rgff’ version 0.1.6

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

check_gff	Test consistency and order of a GFF file
get_features	Analyses the feature type hierarchy of a GFF file
gff_stats	Summarizes the number of features of each type in a GFF file
gff_stats_by_chr	Summarizes the number of elements of each type in each chromosome of a GFF file
gtf_to_gff3	Converts a GTF file into a GFF3 file
plot_features	Plots or exports an image of the feature tree from a GFF file
saf_from_gff	Creates a SAF file from a GTF/GFF3 features for the given pairs of blocks and features
sort_gff	Sorts a GTF/GFF3 file