MixfMRI-package |
fMRI Clustering Analysis |
.FC.CT |
Sets of controls in MixfMRI |
apecma.step.gbd |
Main algorithms implemented in fclust |
cba.cor |
Generalized Cluster-Based Analysis (CBA) Method |
cba.cor.2d |
Generalized Cluster-Based Analysis (CBA) Method |
cba.cor.3d |
Generalized Cluster-Based Analysis (CBA) Method |
cluster.threshold |
Cluster threshold an array. |
cluster_mass |
Cluster threshold an array. |
cov.logit.ETA |
Covariance Matrices of Logit ETA |
cov.logit.z |
Covariance Matrices |
cov.param |
Covariance Matrices |
cov.post.z |
Covariance Matrices |
dmixpval |
Density function of p-values |
dpval |
Density function of p-values |
EC.3D |
Expected Euler Characteristic for a 3D Random Field |
ecm.step.gbd |
Main algorithms implemented in fclust |
em.step.gbd |
Main algorithms implemented in fclust |
fclust |
Main MixfMRI function |
fdr.bh.p1 |
False Discovery Rates for Spatial Signals using Benjamini and Heller (2007) |
fdr.bh.p2 |
False Discovery Rates for Spatial Signals using Benjamini and Heller (2007) |
gcv.smooth2d |
Generate datasets with smoothing for MixfMRI simulations |
gendataset |
Generate datasets for MixfMRI simulations |
initial.em.gbd |
Main initialization functions |
initial.RndEM.gbd |
Main initialization functions |
lmt.I |
Likelihood Mixture Tests with Identity Cov Matrix or Only p-values |
lmt.pv |
Likelihood Mixture Tests with Identity Cov Matrix or Only p-values |
logor.stat |
Compute Statistics for Log Odds Ratio of Posterior Probability |
lrt |
Likelihood ratio tests |
lrt.betaab |
Likelihood ratio tests |
lrt.betamean |
Likelihood ratio tests |
lrt2 |
Likelihood ratio tests |
MixfMRI |
fMRI Clustering Analysis |
PARAM |
Main MixfMRI function |
PARAM.org |
Main MixfMRI function |
plotfclust |
Main plotting function |
plotfclustpv |
Main plotting function |
plotpv |
Main plotting function |
plotpvlegend |
Main plotting function |
post.prob |
Covariance Matrices |
print.fclust |
Print fclust related outputs |
pstats |
Example datasets in MixfMRI |
pval.2d.complex |
Example datasets in MixfMRI |
pval.2d.mag |
Example datasets in MixfMRI |
qvalue |
Q-values using Benjamini and Hochberg (1995) |
set.global |
Main MixfMRI function |
shepp0fMRI |
Example datasets in MixfMRI |
shepp1fMRI |
Example datasets in MixfMRI |
shepp2fMRI |
Example datasets in MixfMRI |
sheppAnat |
Example datasets in MixfMRI |
summarized.overlap |
Summarized Overlap |
Threshold.Bonferroni |
Calculates Bonferroni Threshold |
Threshold.FDR |
False Discovery Rate (FDR) Threshold |
Threshold.RF |
Random Field Theory Thersholds. |
toy1 |
Example datasets in MixfMRI |
toy2 |
Example datasets in MixfMRI |