calCov |
Calculate stationary Gaussian process kernel |
FNdat |
Dataset of noisy observations from the FitzHugh-Nagumo (FN) equations |
fnmodelDtheta |
The FitzHugh-Nagumo (FN) equations |
fnmodelDx |
The FitzHugh-Nagumo (FN) equations |
fnmodelODE |
The FitzHugh-Nagumo (FN) equations |
gpcov |
Conditional covariance of Gaussian process given observations |
gpmean |
Conditional mean of Gaussian process given observations |
gpsmoothing |
Gaussian process smoothing |
gpsmoothllik |
Marginal log-likelihood for Gaussian process smoothing |
hes1logmodelDtheta |
Hes1 equations: oscillation of mRNA and protein levels |
hes1logmodelDx |
Hes1 equations: oscillation of mRNA and protein levels |
hes1logmodelODE |
Hes1 equations: oscillation of mRNA and protein levels |
hes1modelDtheta |
Hes1 equations: oscillation of mRNA and protein levels |
hes1modelDx |
Hes1 equations: oscillation of mRNA and protein levels |
hes1modelODE |
Hes1 equations: oscillation of mRNA and protein levels |
is.magioutput |
MagiSolver output ('magioutput') object |
magi |
'magi': MAnifold-Constrained Gaussian Process Inference |
magioutput |
MagiSolver output ('magioutput') object |
MagiPosterior |
MAGI posterior density |
MagiSolver |
MAnifold-constrained Gaussian process Inference (MAGI) |
plot.magioutput |
Generate plots from 'magioutput' object |
ptransmodelDtheta |
Protein transduction model |
ptransmodelDx |
Protein transduction model |
ptransmodelODE |
Protein transduction model |
setDiscretization |
Set discretization level |
summary.magioutput |
Summary of parameter estimates from 'magioutput' object |
testDynamicalModel |
Test dynamic system model specification |