MAnifold-Constrained Gaussian Process Inference

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Documentation for package ‘magi’ version 1.2.2

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

calCov	Calculate stationary Gaussian process kernel
FNdat	Dataset of noisy observations from the FitzHugh-Nagumo (FN) equations
fnmodelDtheta	The FitzHugh-Nagumo (FN) equations
fnmodelDx	The FitzHugh-Nagumo (FN) equations
fnmodelODE	The FitzHugh-Nagumo (FN) equations
gpcov	Conditional covariance of Gaussian process given observations
gpmean	Conditional mean of Gaussian process given observations
gpsmoothing	Gaussian process smoothing
gpsmoothllik	Marginal log-likelihood for Gaussian process smoothing
hes1logmodelDtheta	Hes1 equations: oscillation of mRNA and protein levels
hes1logmodelDx	Hes1 equations: oscillation of mRNA and protein levels
hes1logmodelODE	Hes1 equations: oscillation of mRNA and protein levels
hes1modelDtheta	Hes1 equations: oscillation of mRNA and protein levels
hes1modelDx	Hes1 equations: oscillation of mRNA and protein levels
hes1modelODE	Hes1 equations: oscillation of mRNA and protein levels
is.magioutput	MagiSolver output ('magioutput') object
magi	'magi': MAnifold-Constrained Gaussian Process Inference
magioutput	MagiSolver output ('magioutput') object
MagiPosterior	MAGI posterior density
MagiSolver	MAnifold-constrained Gaussian process Inference (MAGI)
plot.magioutput	Generate plots from 'magioutput' object
ptransmodelDtheta	Protein transduction model
ptransmodelDx	Protein transduction model
ptransmodelODE	Protein transduction model
setDiscretization	Set discretization level
summary.magioutput	Summary of parameter estimates from 'magioutput' object
testDynamicalModel	Test dynamic system model specification