Integrative Pathway Enrichment Analysis of Multivariate Omics
Data
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Documentation for package ‘ActivePathways’ version 1.1.1
Help Pages
| ActivePathways | ActivePathways |
| brownsMethod | Merge p-values using the Brown's method. |
| columnSignificance | Determine which terms are found to be significant using each column individually. |
| export_as_CSV | Export the results from ActivePathways as a comma-separated values (CSV) file. |
| GMT | Read and Write GMT files |
| gmt | Read and Write GMT files |
| hypergeometric | Hypergemoetric test |
| is.GMT | Read and Write GMT files |
| makeBackground | Make a background list of genes (i.e., the statistical universe) based on all the terms (gene sets, pathways) considered. |
| merge_p_values | Merge a list or matrix of p-values |
| orderedHypergeometric | Ordered Hypergeometric Test |
| prepareCytoscape | Prepare files for building an enrichment map network visualization in Cytoscape |
| read.GMT | Read and Write GMT files |
| write.GMT | Read and Write GMT files |