example_flocker_model_single |
Example single-season flocker model |
fitted_flocker |
Posterior predictive distributions for modeled probabilities |
flock |
Fit an occupancy model |
flocker_stancode |
Generate stan code for an occupancy model |
flocker_standata |
Generate stan data for an occupancy model |
get_flocker_prior |
Get prior for occupancy model |
get_Z |
Get posterior distribution of the Z matrix |
log1m_inv_logit |
Numerically stable log one-minus inverse logit |
log_inv_logit |
Numerically stable log inverse logit |
log_lik_flocker |
Compute unit-wise or series-wise log-likelihood matrix for a flocker_fit object |
loo_compare_flocker |
LOO comparisons for flocker models. |
loo_flocker |
Compute loo for flocker_fit objects |
make_flocker_data |
Format data for occupancy model with 'flock()'. |
make_flocker_data_augmented |
#' Format data for data-augmented occupancy model, to be passed to 'flock()'. |
make_flocker_data_dynamic |
Format data for dynamic (multi-season) occupancy model, to be passed to 'flock()'. |
make_flocker_data_static |
Format data for single-season occupancy model, to be passed to 'flock()'. |
predict_flocker |
Get posterior predictions from a flocker model |
simulate_flocker_data |
Simulate data for use with 'make_flocker_data()' and downstream functions. |