Dyadic Mixed Model for Pedigree Data

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Documentation for package ‘dmm’ version 2.1-9

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

dmm-package	Dyadic mixed model analysis for pedigree data
chartodec	Convert a vector from character to decimal numbers
condense.dmmarray	Condense an object of type 'dmmarray' to an object of type 'dmm'
condense.dmmblockarray	Condense an object of type 'dmmblockarray' to an object of type 'dmm'
csummary	Make summary tables of (co)variance component estimates sorted into class-specific classes for a dmm object.
csummary.dmm	Make summary tables of (co)variance component estimates sorted into class-specific classes for a dmm object.
dmm	Fit a dyadic mixed model to pedigree data
dmm.default	Fit a dyadic mixed model to pedigree data
dt8bal.df	A balanced dataset with eight individuals.
gprint	Generic function for printing genetic parameters contained in an object of class 'dmm'.
gprint.dmm	Print method for genetic parameters contained in an object of class 'dmm'.
gresponse	Compute response to selection, given phenotypic selection differentials.
gresponse.dmm	Compute response to selection, given phenotypic selection differentials.
gsummary	Make summary tables of genetic parameters for a dmm object
gsummary.dmm	Make summary tables of genetic parameters for a dmm object
harv101.df	Harvey dataset
make.countarray	Count the number of observations in a dataframe or an 'mdf' object for all traitpairs in the supplied list of traits.
make.ctable	Generates a list of vectors containing sets of variance component names
make.dmmobj	Construct an object of class 'dmm' from user-supplied data
mdf	Prepare a dataframe for use with dmm function
merino.df	Australian Merino sheep research dataset
pedcheck	Checks that the Id, SId, and DId columns of a dataframe are valid for function 'dmm()'.
pedrenum	Renumbers the Id, SId, and DId columns of a dataframe
plot.dmm	Plot residuals from fitting dyadic model
print.csummary.dmm	Print method for object of class 'csummary.dmm'.
print.dmm	Print method for a 'dmm()' fitted model object.
print.gresponse.dmm	Print method for object of class 'gresponse.dmm'.
print.gsummary.dmm	Print method for object of class 'gsummary.dmm'.
print.summary.dmm	Print method for an object of class 'summary.dmm'.
quercus.df	Quercus example dataset
sheep.df	Demonstration sheep dataset
summary.dmm	Make summary tables of (co)variance component estimates and fixed effect estimates for a dmm object.
summary.gresponse.dmm	Summary method for object of class 'gresponse.dmm'.
tstmo1.df	Dfreml example dataset
unfactor	Convert a vector from factor to numeric
warcolak.convert	Convert 'warcolak' data file to format required for a dataframe for 'dmm()' or 'mdf()'.