openCR-package |
Open Population Capture-Recapture Models |
age.matrix |
Session-specific Ages |
AIC.openCR |
Compare openCR Models |
AIC.openCRlist |
Compare openCR Models |
bd.array |
Summarise Non-spatial Open-population Data |
classMembership |
Class Membership Probability for Mixture Models |
classMembership.openCR |
Class Membership Probability for Mixture Models |
cloned.fit |
Cloning to Evaluate Identifiability |
collate |
Array of Parameter Estimates |
collate.openCR |
Array of Parameter Estimates |
collate.openCRlist |
Array of Parameter Estimates |
cumMove |
Probability Distribution After Movement |
cyclic.fit |
Internal Functions |
derived.openCR |
Derived Parameters From openCR Models |
derived.openCRlist |
Derived Parameters From openCR Models |
dipperCH |
Dippers |
dkernel |
Kernel Distribution Functions |
expected.d |
Expected Distance Moved |
extractFocal |
Moving Window Functions |
FebpossumCH |
Orongorongo Valley Brushtail Possums |
fieldvoleCH |
Kielder Field Voles |
gkernel |
Kernel Distribution Functions |
gonodontisCH |
Gonodontis Moths |
JS.counts |
Summarise Non-spatial Open-population Data |
JS.direct |
Jolly-Seber Estimates |
LLsurface |
Plot Likelihood Surface |
LLsurface.openCR |
Plot Likelihood Surface |
logLik.openCR |
Compare openCR Models |
m.array |
Summarise Non-spatial Open-population Data |
make.kernel |
Discrete Movement Kernel |
make.table |
Tabulate Estimates From Multiple Models |
makeNewData |
Create Default Design Data |
makeNewData.openCR |
Create Default Design Data |
matchscale |
Match Kernel |
microtusCH |
Patuxent Meadow Voles |
microtusFCH |
Patuxent Meadow Voles |
microtusFMCH |
Patuxent Meadow Voles |
microtusMCH |
Patuxent Meadow Voles |
microtusRDCH |
Patuxent Meadow Voles |
modelAverage |
Averaging of OpenCR Models Using Akaike's Information Criterion |
modelAverage.openCR |
Averaging of OpenCR Models Using Akaike's Information Criterion |
modelAverage.openCRlist |
Averaging of OpenCR Models Using Akaike's Information Criterion |
Movement models |
List of Movement Models |
moving.fit |
Moving Window Functions |
openCR |
Open Population Capture-Recapture Models |
openCR-defunct |
Defunct Functions in Package 'openCR' |
openCR-deprecated |
Deprecated Functions in Package 'openCR' |
openCR.design |
Design Data for Open population Models |
openCR.esa |
Derived Parameters From openCR Models |
openCR.fit |
Fit Open Population Capture-Recapture Model |
openCR.pdot |
Derived Parameters From openCR Models |
openCRlist |
Bundle openCR Models |
par.openCR.fit |
Fit Multiple openCR Models |
PCH1 |
Internal Functions |
PCH1secr |
Internal Functions |
pkernel |
Kernel Distribution Functions |
plot.derivedopenCR |
Plot Derived Estimates |
plot.kernel |
Discrete Movement Kernel |
plot.openCR |
Plot Estimates |
pradelloglik |
Internal Functions |
predict.openCR |
openCR Model Predictions |
predict.openCRlist |
openCR Model Predictions |
primarysessions |
Data Manipulation |
print.derivedopenCR |
Print Method for Derived Estimates |
print.openCR |
Print or Summarise openCR Object |
proportionInPolygon |
Probability Distribution After Movement |
prwi |
Internal Functions |
prwisecr |
Internal Functions |
qkernel |
Kernel Distribution Functions |
read.inp |
Import Data from RMark Input Format |
rev.capthist |
Reverse Primary Sessions |
runsim.nonspatial |
Simulate Capture Histories |
runsim.RMark |
Simulate Capture Histories |
runsim.spatial |
Simulate Capture Histories |
secondarysessions |
Data Manipulation |
sim.nonspatial |
Simulate Capture Histories |
squeeze |
Unique Capture Histories |
strata |
Stratum names |
strata<- |
Stratum names |
stratify |
Stratify Capture-Recapture Data |
summary.kernel |
Discrete Movement Kernel |
summary.openCR |
Print or Summarise openCR Object |
sumsims |
Simulate Capture Histories |
ucare.cjs |
Goodness-of-fit tests for the Cormack-Jolly-Seber model |
unsqueeze |
Unique Capture Histories |
[.openCRlist |
Bundle openCR Models |