Open Population Capture-Recapture

---

Documentation for package ‘openCR’ version 2.2.6

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

openCR-package	Open Population Capture-Recapture Models
age.matrix	Session-specific Ages
AIC.openCR	Compare openCR Models
AIC.openCRlist	Compare openCR Models
bd.array	Summarise Non-spatial Open-population Data
classMembership	Class Membership Probability for Mixture Models
classMembership.openCR	Class Membership Probability for Mixture Models
cloned.fit	Cloning to Evaluate Identifiability
collate	Array of Parameter Estimates
collate.openCR	Array of Parameter Estimates
collate.openCRlist	Array of Parameter Estimates
cumMove	Probability Distribution After Movement
cyclic.fit	Internal Functions
derived.openCR	Derived Parameters From openCR Models
derived.openCRlist	Derived Parameters From openCR Models
dipperCH	Dippers
dkernel	Kernel Distribution Functions
expected.d	Expected Distance Moved
extractFocal	Moving Window Functions
FebpossumCH	Orongorongo Valley Brushtail Possums
fieldvoleCH	Kielder Field Voles
gkernel	Kernel Distribution Functions
gonodontisCH	Gonodontis Moths
JS.counts	Summarise Non-spatial Open-population Data
JS.direct	Jolly-Seber Estimates
LLsurface	Plot Likelihood Surface
LLsurface.openCR	Plot Likelihood Surface
logLik.openCR	Compare openCR Models
m.array	Summarise Non-spatial Open-population Data
make.kernel	Discrete Movement Kernel
make.table	Tabulate Estimates From Multiple Models
makeNewData	Create Default Design Data
makeNewData.openCR	Create Default Design Data
matchscale	Match Kernel
microtusCH	Patuxent Meadow Voles
microtusFCH	Patuxent Meadow Voles
microtusFMCH	Patuxent Meadow Voles
microtusMCH	Patuxent Meadow Voles
microtusRDCH	Patuxent Meadow Voles
modelAverage	Averaging of OpenCR Models Using Akaike's Information Criterion
modelAverage.openCR	Averaging of OpenCR Models Using Akaike's Information Criterion
modelAverage.openCRlist	Averaging of OpenCR Models Using Akaike's Information Criterion
Movement models	List of Movement Models
moving.fit	Moving Window Functions
openCR	Open Population Capture-Recapture Models
openCR-defunct	Defunct Functions in Package 'openCR'
openCR-deprecated	Deprecated Functions in Package 'openCR'
openCR.design	Design Data for Open population Models
openCR.esa	Derived Parameters From openCR Models
openCR.fit	Fit Open Population Capture-Recapture Model
openCR.pdot	Derived Parameters From openCR Models
openCRlist	Bundle openCR Models
par.openCR.fit	Fit Multiple openCR Models
PCH1	Internal Functions
PCH1secr	Internal Functions
pkernel	Kernel Distribution Functions
plot.derivedopenCR	Plot Derived Estimates
plot.kernel	Discrete Movement Kernel
plot.openCR	Plot Estimates
pradelloglik	Internal Functions
predict.openCR	openCR Model Predictions
predict.openCRlist	openCR Model Predictions
primarysessions	Data Manipulation
print.derivedopenCR	Print Method for Derived Estimates
print.openCR	Print or Summarise openCR Object
proportionInPolygon	Probability Distribution After Movement
prwi	Internal Functions
prwisecr	Internal Functions
qkernel	Kernel Distribution Functions
read.inp	Import Data from RMark Input Format
rev.capthist	Reverse Primary Sessions
runsim.nonspatial	Simulate Capture Histories
runsim.RMark	Simulate Capture Histories
runsim.spatial	Simulate Capture Histories
secondarysessions	Data Manipulation
sim.nonspatial	Simulate Capture Histories
squeeze	Unique Capture Histories
strata	Stratum names
strata<-	Stratum names
stratify	Stratify Capture-Recapture Data
summary.kernel	Discrete Movement Kernel
summary.openCR	Print or Summarise openCR Object
sumsims	Simulate Capture Histories
ucare.cjs	Goodness-of-fit tests for the Cormack-Jolly-Seber model
unsqueeze	Unique Capture Histories
[.openCRlist	Bundle openCR Models