Basket Trial Analysis

---

Documentation for package ‘basket’ version 0.10.11

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

basket-package	Basket Trial Analysis
basket	Create a Basket Trial Analysis
basket_map	Get the Basketwise Maximum A Posteriori Probability Matrix
basket_name	The Names of the Baskets
basket_pep	The Basketwise Posterior Exchangeability Probability Matrix
cluster_baskets	Get the Cluster Members of MEM Models
cluster_map	Get the Clusterwise Maximum A Posteriori Probability Matrix
cluster_membership	Cluster Baskets Based on the Posterior Exchangeabilities
cluster_pep	Get the Clusterwise Posterior Exchangeability Matrix
get_seed	Get the Current Random Seed
mem_exact	Fit the Exact MEM Model
mem_mcmc	Fit the MEM Model using MCMC
plot_density	Plot the Response Densities in Basket Trials
plot_map	Plot the Map Exchangeability of a Basket Trial
plot_mem	Plot the Prior, MAP, and PEP of a Basket Trial
plot_pep	Plot the Posterior Exchangeability of a Basket Trial
plot_pep_graph	Plot a Network Graph of the PEP Matrix
sample_posterior	Sample Posterior Samples from a Basket Trial
update_p0	Update Full Bayes results with different p0 values
vemu	Summary Data from the Vemurafenib Study
vemu_wide	Summary Data from the Vemurafenib Study