Basket Trial Analysis


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Documentation for package ‘basket’ version 0.10.11

Help Pages

basket-package Basket Trial Analysis
basket Create a Basket Trial Analysis
basket_map Get the Basketwise Maximum A Posteriori Probability Matrix
basket_name The Names of the Baskets
basket_pep The Basketwise Posterior Exchangeability Probability Matrix
cluster_baskets Get the Cluster Members of MEM Models
cluster_map Get the Clusterwise Maximum A Posteriori Probability Matrix
cluster_membership Cluster Baskets Based on the Posterior Exchangeabilities
cluster_pep Get the Clusterwise Posterior Exchangeability Matrix
get_seed Get the Current Random Seed
mem_exact Fit the Exact MEM Model
mem_mcmc Fit the MEM Model using MCMC
plot_density Plot the Response Densities in Basket Trials
plot_map Plot the Map Exchangeability of a Basket Trial
plot_mem Plot the Prior, MAP, and PEP of a Basket Trial
plot_pep Plot the Posterior Exchangeability of a Basket Trial
plot_pep_graph Plot a Network Graph of the PEP Matrix
sample_posterior Sample Posterior Samples from a Basket Trial
update_p0 Update Full Bayes results with different p0 values
vemu Summary Data from the Vemurafenib Study
vemu_wide Summary Data from the Vemurafenib Study