+-method |
plus method add method for S4 class itol.hub and itol.unit |
complex_html_text |
Complex HTML text |
convert_01 |
Convert character data to 0/1 |
convert_01_to_connect |
Convert 0/1 data to connection pairs |
convert_range_to_node |
Convert range to node id |
correct_get_color |
correct_get_color |
count_to_tree |
Calculate tree based on count matrix |
create_hub |
Create itol.hub Object |
create_theme |
Create itol.theme Object |
create_unit |
Create itol.unit |
df_merge |
Merge two data frame |
fa_read |
Read fasta file |
fa_write |
Write fasta file |
file_get_dir |
Get file dir |
file_get_name |
Get file name |
file_to_unit |
Create itol.unit Object from file |
get_color |
get_color |
head_line |
head line |
hub_to_unit |
Create itol.unit Object from object |
inbuilt_themes |
inbuilt themes |
itol.hub |
The itol.hub Class |
itol.hub-class |
The itol.hub Class |
itol.theme |
The itol.theme Class |
itol.theme-class |
The itol.theme Class |
itol.unit |
The itol.unit Class |
itol.unit-class |
The itol.unit Class |
learn_data |
Learn data from template file |
learn_data_from_file |
Learn object data from file |
learn_data_from_files |
Learn object data from files |
learn_data_from_unit |
Learn object data from unit |
learn_data_from_unit_list |
Learn object data from units |
learn_df |
Learn from tree |
learn_field |
Learn field |
learn_legend |
Learn legend |
learn_line |
Learn paramter |
learn_profile |
Learn profile |
learn_separator |
Learn separator |
learn_subdf |
Learn sub data frame |
learn_theme_align |
Learn align |
learn_theme_alignment |
Learn alignment |
learn_theme_bar |
Learn bar |
learn_theme_basic_plot |
Learn basic plot |
learn_theme_basic_theme |
Learn basic theme |
learn_theme_binary |
Learn binary |
learn_theme_border |
Learn border |
learn_theme_common_themes |
Learn common themes |
learn_theme_connection |
Learn connection |
learn_theme_domain |
Learn domain |
learn_theme_externalshape |
Learn externalshape |
learn_theme_heatmap |
Learn heatmap |
learn_theme_image |
Learn image |
learn_theme_label |
Learn label |
learn_theme_linechart |
Learn linechart |
learn_theme_piechart |
Learn piechart |
learn_theme_specific_themes |
Learn specific themes |
learn_theme_strip_label |
Learn strip label |
learn_type |
Learn template type |
line_clean |
Filter out comments and empty lines |
line_split |
Split lines into two parts |
merge_unit |
Merge units |
search_tree_file |
Search tree file |
show-method |
show method for S4 class itol.hub |
template_groups |
template groups |
template_parameters_count |
template parameters count |
train_theme |
Train inbuilt theme |
unite_rows |
Paste rows |
use.theme |
Extract theme from inbuilt_themes |
write_hub |
Write all data object into files |
write_raw |
Write raw data into files |
write_unit |
Write unit object into file |