adjustKidsPerCouple | Generate or Adjust Number of Kids per Couple Based on Mating Rate |

allGens | allGens A function to calculate the number of individuals in each generation. This is a supporting function for 'simulatePedigree'. |

assignCoupleIds | Assign Couple IDs |

buildBetweenGenerations | Process Generation Connections |

buildWithinGenerations | Process Generations for Pedigree Simulation |

calculateH | Falconer's Formula |

calculateRelatedness | Calculate Relatedness Coefficient |

checkIDs | Validates and Optionally Repairs Unique IDs in a Pedigree Dataframe |

checkSex | Validates and Optionally Repairs Sex Coding in a Pedigree Dataframe |

comp2vech | comp2vech Turn a variance component relatedness matrix into its half-vectorization |

createGenDataFrame | Create Data Frame for Generation |

determineSex | Determine Sex of Offspring |

dropLink | dropLink A function to drop a person from his/her parents in the simulated pedigree 'data.frame'. The person can be dropped by specifying his/her ID or by specifying the generation which the randomly to-be-dropped person is in. The function can separate one pedigree into two pedigrees. Separating into small pieces should be done by running the function multiple times. This is a supplementary function for 'simulatePedigree'. |

evenInsert | evenInsert A function to insert m elements evenly into a length n vector. |

famSizeCal | famSizeCal A function to calculate the total number of individuals in a pedigree given parameters. This is a supporting function for function 'simulatePedigree' |

fitComponentModel | fitComponentModel Fit the estimated variance components of a model to covariance data |

hazard | Simulated pedigree with two extended families and an age-related hazard |

identifyComponentModel | identifyComponentModel Determine if a variance components model is identified |

inbreeding | Artificial pedigree data on eight families with inbreeding |

inferRelatedness | Infer Relatedness Coefficient |

makeInbreeding | makeInbreeding A function to create inbred mates in the simulated pedigree 'data.frame'. Inbred mates can be created by specifying their IDs or the generation the inbred mate should be created. When specifying the generation, inbreeding between siblings or 1st cousin needs to be specified. This is a supplementary function for 'simulatePedigree'. |

makeTwins | makeTwins A function to impute twins in the simulated pedigree 'data.frame'. Twins can be imputed by specifying their IDs or by specifying the generation the twin should be imputed. This is a supplementary function for 'simulatePedigree'. |

markPotentialChildren | Mark and Assign children |

ped2add | Take a pedigree and turn it into an additive genetics relatedness matrix |

ped2ce | Take a pedigree and turn it into an extended environmental relatedness matrix |

ped2cn | Take a pedigree and turn it into a common nuclear environmental relatedness matrix |

ped2com | Take a pedigree and turn it into a relatedness matrix |

ped2fam | Segment Pedigree into Extended Families |

ped2graph | Turn a pedigree into a graph |

ped2maternal | Add a maternal line ID variable to a pedigree |

ped2mit | Take a pedigree and turn it into a mitochondrial relatedness matrix |

ped2mt | Take a pedigree and turn it into a mitochondrial relatedness matrix |

ped2paternal | Add a paternal line ID variable to a pedigree |

plotPedigree | plotPedigree A wrapped function to plot simulated pedigree from function 'simulatePedigree'. This function require the installation of package 'kinship2'. |

potter | Fictional pedigree data on a wizarding family |

readGedcom | Read a GEDCOM File |

recodeSex | Recodes Sex Variable in a Pedigree Dataframe |

relatedness | relatedness (Deprecated) |

related_coef | related_coef (Deprecated) |

repairIDs | Repair Missing IDs |

repairSex | Repairs Sex Coding in a Pedigree Dataframe |

resample | Resample Elements of a Vector |

SimPed | SimPed (Deprecated) |

simulatePedigree | Simulate Pedigrees This function simulates "balanced" pedigrees based on a group of parameters: 1) k - Kids per couple; 2) G - Number of generations; 3) p - Proportion of males in offspring; 4) r - Mating rate. |

sizeAllGens | sizeAllGens An internal supporting function for 'simulatePedigree'. |

summarizeFamilies | Summarize the families in a pedigree |

summarizeMatrilines | Summarize the maternal lines in a pedigree |

summarizePatrilines | Summarize the paternal lines in a pedigree |

summarizePedigrees | Summarize Pedigree Data |

vech | vech Create the half-vectorization of a matrix |