An R Package for Extended Behavior Genetics Analysis

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Documentation for package ‘BGmisc’ version 1.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

BGmisc-package	Behavior Genetic Miscellaneous functions in R
allGens	allGens A function to calculate the number of individuals in each generation. This is a supporting function for 'simulatePedigree'.
BGmisc_package	Behavior Genetic Miscellaneous functions in R
calculateRelatedness	Calculate Relatedness Coefficient
comp2vech	comp2vech Turn a variance component relatedness matrix into its half-vectorization
evenInsert	evenInsert A function to insert m elements evenly into a length n vector.
famSizeCal	famSizeCal A function to calculate the total number of individuals in a pedigree given parameters. This is a supporting function for function 'simulatePedigree'
fitComponentModel	fitComponentModel Fit the estimated variance components of a model to covariance data
hazard	Simulated pedigree with two extended families and an age-related hazard
identifyComponentModel	identifyComponentModel Determine if a variance components model is identified
inbreeding	Artificial pedigree data on seven families with inbreeding
inferRelatedness	Infer Relatedness Coefficient
ped2add	Take a pedigree and turn it into an additive genetics relatedness matrix
ped2ce	Take a pedigree and turn it into an extended environmental relatedness matrix
ped2cn	Take a pedigree and turn it into a common nuclear environmental relatedness matrix
ped2com	Take a pedigree and turn it into a relatedness matrix
ped2fam	Add an extended family ID variable to a pedigree
ped2graph	Turn a pedigree into a graph
ped2mit	Take a pedigree and turn it into a mitochondrial relatedness matrix
plotPedigree	plotPedigree A wrapped function to plot simulated pedigree from function 'simulatePedigree'. This function require the installation of package 'kinship2'.
relatedness	relatedness (Deprecated)
related_coef	related_coef (Deprecated)
SimPed	SimPed (Deprecated)
simulatePedigree	Simulate Pedigrees
sizeAllGens	sizeAllGens An internal supporting function for 'simulatePedigree'.
vech	vech Create the half-vectorization of a matrix