General Unified Threshold Model of Survival for Bees using Bayesian Inference

---

Documentation for package ‘BeeGUTS’ version 1.1.3

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

BeeGUTS-package	'BeeGUTS' package; a package to perform GUTS modelling for Bee experiments.
BeeGUTS	'BeeGUTS' package; a package to perform GUTS modelling for Bee experiments.
betacyfluthrinChronic	Survival datasets for _Honey bees_ exposed to constant concentration of Betacyfluthrin for 10 days.
concAC	Recalculate the concentrations for the acute contact tests for bees
concAO	Recalculate concentration for the acute oral tests for bees
concCst	Recalculate the concentrations for the chronic oral tests for bees from mg a.s./kg feed to mug/bee
criteriaCheck	Computes PPC and NRMSE as defined in EFSA 2018
dataGUTS	Read and format the data for the BeeGUTS model
fitBeeGUTS	Fit a GUTS model for bees survival analysis using Bayesian Inference (stan)
fitBetacyfluthrin_Chronic	Model calibration results datasets for _Honey bees_ exposed to constant concentration of Betacyfluthrin for 10 days.
LCx	Predict the Lethal Concentration method at which x\% of organisms die for any specified time-point for a 'beeSurvFit' object
LCx.beeSurvFit	Predict the Lethal Concentration at which x\% of organisms die for any specified time-point for a 'beeSurvFit' object
plot.beeSurvData	Plotting method for 'beeSurvData' objects
plot.beeSurvFit	Plotting method for 'beeSurvFit' objects
plot.beeSurvPred	Plotting method for 'beeSurvPred' objects
plot.beeSurvValidation	Plotting method for 'beeSurvValidation' objects
plot.ppc	Plotting method for 'ppc' objects
ppc	Generates an object to be used in posterior predictive check for 'beeSurvFit', 'beeSurvPred'
ppc.beeSurvFit	Posterior predictive check method for 'beeSurvFit' objects
predict.beeSurvFit	Predict method for 'beeSurvFit' objects
summary.beeSurvFit	Summary of 'beeSurvFit' objects
summary.LCx	Summary of 'LCx' objects
traceplot	Plotting method for traces and densities for 'beeSurvFit' objects
traceplot.beeSurvFit	Plotting method for traces and densities for 'beeSurvFit' objects
validate	Validation method for 'beeSurvFit ' objects
validate.beeSurvFit	Validate method for 'beeSurvFit' objects