ancestry_categories |
Ancestry categories and classes |
bind |
Bind PGS Catalog objects |
clear_cache |
Clear quincunx cache of memoised functions |
cohorts-class |
An S4 class to represent a set of cohorts |
get_ancestry_categories |
Get ancestry categories and classes |
get_cohorts |
Get PGS Catalog Cohorts |
get_performance_metrics |
Get PGS Catalog Performance Metrics |
get_publications |
Get PGS Catalog Publications |
get_releases |
Get PGS Catalog Releases |
get_sample_sets |
Get PGS Catalog Sample Sets |
get_scores |
Get PGS Catalog Scores |
get_traits |
Get PGS Catalog Traits |
get_trait_categories |
Get PGS Catalog Trait Categories |
intersect |
Set operations on PGS Catalog objects |
n |
Number of PGS Catalog entities |
n-method |
Number of PGS Catalog entities |
open_in_dbsnp |
Browse dbSNP from SNP identifiers. |
open_in_pgs_catalog |
Browse PGS Catalog entities from the PGS Catalog Web Graphical User Interface |
open_in_pubmed |
Browse PubMed from PubMed identifiers. |
performance_metrics-class |
An S4 class to represent a set of PGS Catalog Performance Metrics |
pgp_to_pgs |
Map PGP identifiers to PGS identifiers |
pgp_to_ppm |
Map PGP identifiers to PPM identifiers |
pgp_to_pss |
Map PGP identifiers to PSS identifiers |
pgs_to_pgp |
Map PGS identifiers to PGP identifiers |
pgs_to_ppm |
Map PGS identifiers to PPM identifiers |
pgs_to_pss |
Map PGS identifiers to PSS identifiers |
pgs_to_study |
Map PGS identifiers to GWAS study identifiers |
ppm_to_pgp |
Map PPM identifiers to PGP identifiers |
ppm_to_pgs |
Map PPM identifiers to PGS identifiers |
ppm_to_pss |
Map PPM identifiers to PSS identifiers |
pss_to_pgp |
Map PSS identifiers to PGP identifiers |
pss_to_pgs |
Map PSS identifiers to PGS identifiers |
pss_to_ppm |
Map PSS identifiers to PPM identifiers |
publications-class |
An S4 class to represent a set of PGS Catalog Publications |
read_scoring_file |
Read a polygenic scoring file |
releases-class |
An S4 class to represent a set of PGS Catalog Releases |
sample_sets-class |
An S4 class to represent a set of PGS Catalog Sample Sets |
scores-class |
An S4 class to represent a set of PGS Catalog Polygenic Scores |
setdiff |
Set operations on PGS Catalog objects |
setequal |
Set operations on PGS Catalog objects |
setop |
Set operations on PGS Catalog objects |
stages |
Study stages |
study_to_pgs |
Map GWAS studies identifiers to PGS identifiers |
traits-class |
An S4 class to represent a set of PGS Catalog Traits |
trait_categories-class |
An S4 class to represent a set of PGS Catalog Trait Categories |
union |
Set operations on PGS Catalog objects |
write_xlsx |
Export a PGS Catalog object to xlsx |