Handling Vegetation Data Sets
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Documentation for package ‘vegtable’ version 0.1.8
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A B C D E H K L M N P R S T U V W misc
-- A --
| add_releves | Merge relevés from data frames into vegtable objects |
| add_releves-method | Merge relevés from data frames into vegtable objects |
| add_releves<- | Merge relevés from data frames into vegtable objects |
| add_releves<--method | Merge relevés from data frames into vegtable objects |
| as | Coerce objects to lists |
| as.list-method | Coerce objects to lists |
| aspect_conv | Conversion of aspect classes to azimuth |
| aspect_conv-data | Conversion of aspect classes to azimuth |
-- B --
| braun_blanquet | Conversion of Braun-Blanquet codes to cover percentage |
| braun_blanquet-data | Conversion of Braun-Blanquet codes to cover percentage |
-- C --
| clean | Clean orphaned records in vegtable object |
| clean-method | Clean orphaned records in vegtable object |
| clean_once | Clean orphaned records in vegtable object |
| coerce-method | Coerce objects to lists |
| count_taxa | Count taxa included in vegtable objects |
| count_taxa-method | Count taxa included in vegtable objects |
| count_taxa<- | Count taxa included in vegtable objects |
| count_taxa<--method | Count taxa included in vegtable objects |
| coverconvert | Cover conversion tables |
| coverconvert-class | Cover conversion tables |
| cover_trans | Convert cover scales to percent cover |
| cover_trans-method | Convert cover scales to percent cover |
| cross2db | Generating cross tables from database lists |
| crosstable | Generating cross tables from database lists |
| crosstable-method | Generating cross tables from database lists |
-- D --
| df2coverconvert | Create coverconvert objects |
| df2coverconvert-method | Create coverconvert objects |
| df2coverconvert.data.frame | Create coverconvert objects |
| df2coverconvert.list | Create coverconvert objects |
| df2vegtable | Convert a data frame into a vegtable object. |
| df2vegtable-method | Convert a data frame into a vegtable object. |
| dimnames | Retrieve names of vegtable and coverconvert objects |
| dimnames-method | Retrieve names of vegtable and coverconvert objects |
| dominance | Calculation of statistics at plot level |
| dune_veg | Dutch dune meadows as vegtable |
| dune_veg-data | Dutch dune meadows as vegtable |
-- E --
| evenness | Calculation of statistics at plot level |
| Extract | Select or replace elements in objects |
-- H --
| header | Retrieve or replace slot header in vegtable objects |
| header-method | Retrieve or replace slot header in vegtable objects |
| header<- | Retrieve or replace slot header in vegtable objects |
| header<--method | Retrieve or replace slot header in vegtable objects |
-- K --
| Kenya_veg | Vegetation-plots from Kenya |
| Kenya_veg-data | Vegetation-plots from Kenya |
-- L --
| layers2samples | Add information from slot 'layers' into slot 'samples' |
| layers2samples-method | Add information from slot 'layers' into slot 'samples' |
-- M --
| make_cocktail | Produce a Cocktail classification |
| make_cocktail-method | Produce a Cocktail classification |
-- N --
| names | Retrieve names of vegtable and coverconvert objects |
| names-method | Retrieve names of vegtable and coverconvert objects |
| names<--method | Retrieve names of vegtable and coverconvert objects |
| new_relation | Insert a new variable as relation in vegtable object |
| new_relation-method | Insert a new variable as relation in vegtable object |
| new_relation.vegtable | Insert a new variable as relation in vegtable object |
| new_relation<- | Insert a new variable as relation in vegtable object |
| new_relation<--method | Insert a new variable as relation in vegtable object |
-- P --
| print-method | Summary method for vegtable objects |
-- R --
| read_juice | Exporting tables for Juice |
| relation2header | Insert variables from relations into header |
| relation2header-method | Insert variables from relations into header |
| relation2header.vegtable | Insert variables from relations into header |
| richness | Calculation of statistics at plot level |
-- S --
| set_formula | Produce a Cocktail classification |
| set_formula-method | Produce a Cocktail classification |
| set_group | Produce a Cocktail classification |
| set_group-method | Produce a Cocktail classification |
| set_pseudo | Produce a Cocktail classification |
| set_pseudo-method | Produce a Cocktail classification |
| shaker | Class containing Cocktail algorithms. |
| shaker-class | Class containing Cocktail algorithms. |
| shannon | Calculation of statistics at plot level |
| show-method | Summary method for vegtable objects |
| simpson | Calculation of statistics at plot level |
| subset | Subset functions for vegtable objects |
| subset-method | Subset functions for vegtable objects |
| summary | Summary method for vegtable objects |
| summary-method | Summary method for vegtable objects |
-- T --
| taxa2samples | Insert taxon information into samples |
| taxa2samples-method | Insert taxon information into samples |
| taxa2samples.vegtable | Insert taxon information into samples |
| trait_proportion | Statistics and proportion for taxon traits |
| trait_proportion-method | Statistics and proportion for taxon traits |
| trait_stats | Statistics and proportion for taxon traits |
| trait_stats-method | Statistics and proportion for taxon traits |
| tv2coverconvert | Import of vegetation data from Turboveg databases |
| tv2vegtable | Import of vegetation data from Turboveg databases |
-- U --
| update_det | Update by determined specimens |
| update_det-method | Update by determined specimens |
| used_concepts | Retrieve synonyms or taxon concepts used in a data set |
| used_concepts-method | Retrieve synonyms or taxon concepts used in a data set |
| used_concepts.vegtable | Retrieve synonyms or taxon concepts used in a data set |
| used_synonyms | Retrieve synonyms or taxon concepts used in a data set |
| used_synonyms-method | Retrieve synonyms or taxon concepts used in a data set |
| used_synonyms.vegtable | Retrieve synonyms or taxon concepts used in a data set |
-- V --
| vegtable | Class vegtable. |
| vegtable-class | Class vegtable. |
| vegtable_stat | General statistics from vegtable objects |
| vegtable_stat-method | General statistics from vegtable objects |
| vegtable_stat.vegtable | General statistics from vegtable objects |
| veg_aggregate | Aggregating information into a data frame |
| veg_aggregate-method | Aggregating information into a data frame |
| veg_diversity | Calculation of statistics at plot level |
| veg_diversity-method | Calculation of statistics at plot level |
| veg_diversity.vegtable | Calculation of statistics at plot level |
| veg_diverstiy | Calculation of statistics at plot level |
| veg_relation | Retrieve or replace relations in vegtable objects |
| veg_relation-method | Retrieve or replace relations in vegtable objects |
| veg_relation<- | Retrieve or replace relations in vegtable objects |
| veg_relation<--method | Retrieve or replace relations in vegtable objects |
-- W --
| Wetlands | Vegetation-plots from Tanzania |
| Wetlands-data | Vegetation-plots from Tanzania |
| Wetlands_veg | Vegetation-plots from Tanzania |
| write_juice | Exporting tables for Juice |
| write_juice-method | Exporting tables for Juice |
-- misc --
| $ | Select or replace elements in objects |
| $-method | Select or replace elements in objects |
| $<- | Select or replace elements in objects |
| $<--method | Select or replace elements in objects |
| [ | Select or replace elements in objects |
| [-method | Select or replace elements in objects |
| [<- | Select or replace elements in objects |
| [<--method | Select or replace elements in objects |