deal_net |
Title deal with network |
dise_gene |
a vector of disease related genes |
edge_weight |
weights of edges of a net |
genes_mat |
a one-to-many matrix of GO term and gene |
get_edge_weight |
Title weight edge |
get_gene_mat |
Get a one-to-many matrix of gene and GO term |
get_neighbor |
Title get neighbor of a node |
get_net_disease_term |
Title Get the GO terms for each pair of nodes in the network |
get_node_weight |
Title weight node |
get_Q |
Title get the disease risk transition probability matrix |
get_R |
Title get the final genetic disease risk scores |
get_R_0 |
Title get the vector of initial disease risk scores for all genes |
get_term_mat |
Get a one-to-many matrix of GO term and gene |
get_W |
Title |
metabolic_net |
a matrix, Human metabolic network |
net |
a network of genes |
net_disease |
a network of disease related genes |
net_disease_term |
GO terms for each pair of nodes in the network |
node_weight |
a matrix, genes and their weights |
R_0 |
the vector of initial disease risk scores for all genes |
terms_mat |
a matrix, GO terms and GO genes |