Candidate Gene Prioritization for Non-Communicable Diseases Based on Functional Information

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Documentation for package ‘prioGene’ version 1.0.1

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

deal_net	Title deal with network
dise_gene	a vector of disease related genes
edge_weight	weights of edges of a net
genes_mat	a one-to-many matrix of GO term and gene
get_edge_weight	Title weight edge
get_gene_mat	Get a one-to-many matrix of gene and GO term
get_neighbor	Title get neighbor of a node
get_net_disease_term	Title Get the GO terms for each pair of nodes in the network
get_node_weight	Title weight node
get_Q	Title get the disease risk transition probability matrix
get_R	Title get the final genetic disease risk scores
get_R_0	Title get the vector of initial disease risk scores for all genes
get_term_mat	Get a one-to-many matrix of GO term and gene
get_W	Title
metabolic_net	a matrix, Human metabolic network
net	a network of genes
net_disease	a network of disease related genes
net_disease_term	GO terms for each pair of nodes in the network
node_weight	a matrix, genes and their weights
R_0	the vector of initial disease risk scores for all genes
terms_mat	a matrix, GO terms and GO genes