Robust Bayesian Survival Analysis

---

Documentation for package ‘RoBSA’ version 1.0.2

• DESCRIPTION file.
• Package NEWS.

Help Pages

C D E G I L P R S U W misc

RoBSA-package

RoBSA: Robust Bayesian survival analysis

-- C --

calibrate_meta_analytic	Create meta-analytic predictive prior distributions
calibrate_quartiles	Calibrate prior distributions based on quartiles
check_RoBSA	Check fitted RoBSA object for errors and warnings
check_setup	Prints summary of '"RoBSA"' corresponding to the input
contr.meandif	Mean difference contrast matrix
contr.orthonormal	Orthornomal contrast matrix

-- D --

default_prior	Default prior distributions
diagnostics	Visualizes MCMC diagnostics for a fitted RoBSA object
diagnostics_autocorrelation	Visualizes MCMC diagnostics for a fitted RoBSA object
diagnostics_density	Visualizes MCMC diagnostics for a fitted RoBSA object
diagnostics_trace	Visualizes MCMC diagnostics for a fitted RoBSA object

-- E --

exp-aft	Exponential AFT parametric family.
exp_aft_density	Exponential AFT parametric family.
exp_aft_hazard	Exponential AFT parametric family.
exp_aft_log_density	Exponential AFT parametric family.
exp_aft_log_hazard	Exponential AFT parametric family.
exp_aft_log_survival	Exponential AFT parametric family.
exp_aft_mean	Exponential AFT parametric family.
exp_aft_p	Exponential AFT parametric family.
exp_aft_q	Exponential AFT parametric family.
exp_aft_r	Exponential AFT parametric family.
exp_aft_sd	Exponential AFT parametric family.
exp_aft_survival	Exponential AFT parametric family.
extract_flexsurv	Extract parameter estimates from 'flexsurv' object

-- G --

gamma-aft	Gamma AFT parametric family.
gamma_aft_density	Gamma AFT parametric family.
gamma_aft_hazard	Gamma AFT parametric family.
gamma_aft_log_density	Gamma AFT parametric family.
gamma_aft_log_hazard	Gamma AFT parametric family.
gamma_aft_log_survival	Gamma AFT parametric family.
gamma_aft_mean	Gamma AFT parametric family.
gamma_aft_p	Gamma AFT parametric family.
gamma_aft_q	Gamma AFT parametric family.
gamma_aft_r	Gamma AFT parametric family.
gamma_aft_sd	Gamma AFT parametric family.
gamma_aft_survival	Gamma AFT parametric family.
get_default_prior_aux	Default prior distributions
get_default_prior_beta_alt	Default prior distributions
get_default_prior_beta_alt,	Default prior distributions
get_default_prior_beta_null	Default prior distributions
get_default_prior_beta_null,	Default prior distributions
get_default_prior_factor_alt	Default prior distributions
get_default_prior_factor_alt,	Default prior distributions
get_default_prior_factor_null	Default prior distributions
get_default_prior_factor_null,	Default prior distributions
get_default_prior_intercept	Default prior distributions
get_default_prior_intercept,	Default prior distributions

-- I --

is.RoBSA

Reports whether x is a RoBSA object

-- L --

llogis-aft	Log-logistic AFT parametric family.
llogis_aft_density	Log-logistic AFT parametric family.
llogis_aft_hazard	Log-logistic AFT parametric family.
llogis_aft_log_density	Log-logistic AFT parametric family.
llogis_aft_log_hazard	Log-logistic AFT parametric family.
llogis_aft_log_survival	Log-logistic AFT parametric family.
llogis_aft_mean	Log-logistic AFT parametric family.
llogis_aft_p	Log-logistic AFT parametric family.
llogis_aft_q	Log-logistic AFT parametric family.
llogis_aft_r	Log-logistic AFT parametric family.
llogis_aft_sd	Log-logistic AFT parametric family.
llogis_aft_survival	Log-logistic AFT parametric family.
lnorm-aft	Log-normal AFT parametric family.
lnorm_aft_density	Log-normal AFT parametric family.
lnorm_aft_hazard	Log-normal AFT parametric family.
lnorm_aft_log_density	Log-normal AFT parametric family.
lnorm_aft_log_hazard	Log-normal AFT parametric family.
lnorm_aft_log_survival	Log-normal AFT parametric family.
lnorm_aft_mean	Log-normal AFT parametric family.
lnorm_aft_p	Log-normal AFT parametric family.
lnorm_aft_q	Log-normal AFT parametric family.
lnorm_aft_r	Log-normal AFT parametric family.
lnorm_aft_sd	Log-normal AFT parametric family.
lnorm_aft_survival	Log-normal AFT parametric family.

-- P --

plot.RoBSA	Plots a fitted RoBSA object
plot_density	Survival plots for a RoBSA object
plot_hazard	Survival plots for a RoBSA object
plot_models	Models plot for a RoBSA object
plot_prediction	Survival plots for a RoBSA object
plot_survival	Survival plots for a RoBSA object
predict.RoBSA	Predict method for RoBSA objects.
print.RoBSA	Prints a fitted RoBSA object
print.summary.RoBSA	Prints summary object for RoBSA method
prior	Creates a prior distribution
prior_factor	Creates a prior distribution for factors
prior_informed	Creates an informed prior distribution based on research
prior_informed_medicine_names	Names of medical subfields from the Cochrane database of systematic reviews
prior_none	Creates a prior distribution

-- R --

RoBSA	Fit Robust Bayesian Survival Analysis
RoBSA.get_option	Options for the RoBSA package
RoBSA.options	Options for the RoBSA package
RoBSA.package	RoBSA: Robust Bayesian survival analysis
RoBSA_control	Control MCMC fitting process
RoBSA_options	Options for the RoBSA package
RoBSA_package	RoBSA: Robust Bayesian survival analysis

-- S --

set_autofit_control	Control MCMC fitting process
set_autofit_control,	Control MCMC fitting process
set_convergence_checks	Control MCMC fitting process
summary.RoBSA	Summarize fitted RoBSA object

-- U --

update.RoBSA

Updates a fitted RoBSA object

-- W --

weibull-aft	Weibull AFT parametric family.
weibull_aft_density	Weibull AFT parametric family.
weibull_aft_hazard	Weibull AFT parametric family.
weibull_aft_log_density	Weibull AFT parametric family.
weibull_aft_log_hazard	Weibull AFT parametric family.
weibull_aft_log_survival	Weibull AFT parametric family.
weibull_aft_mean	Weibull AFT parametric family.
weibull_aft_p	Weibull AFT parametric family.
weibull_aft_q	Weibull AFT parametric family.
weibull_aft_r	Weibull AFT parametric family.
weibull_aft_sd	Weibull AFT parametric family.
weibull_aft_survival	Weibull AFT parametric family.

-- misc --

_PACKAGE

RoBSA: Robust Bayesian survival analysis