Identifying Similar T Cell Receptor Hyper-Variable Sequences with 'ClusTCR2'

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Documentation for package ‘ClusTCR2’ version 1.7.3.01

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

ClusTCR	Creates ClusTCR matrix This function identifies similar CDR3 amino acid sequences based on the same length and V_gene
ClusTCR_Large	Creates ClusTCR matrix This function identifies similar CDR3 amino acid sequences based on the same length and V_gene
ggnet2	Copied code from ggnet's ggnet2 function
mcl_cluster	Create the files for labeling the linked clusters from ClusTCR_list_to_matrix function
mcl_cluster_large	Create the files for labeling the linked clusters from ClusTCR_list_to_matrix function
Motif_from_cluster_file	Code for plotting the Motif based on a specific CDR3 length and V gene (see netplot_ClusTCR2 for details).
motif_plot	Code for plotting the Motif based on a specific CDR3 length and V gene (see netplot_ClusTCR2 for ).
motif_plot_large	Code for plotting the Motif based on a specific CDR3 length and V gene (see netplot_ClusTCR2 for details).
netplot_ClusTCR2	Code for displaying the network.