Common R Scripts and Utilities Used by the Statnet Project
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Documentation for package ‘statnet.common’ version 4.9.0
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A B C D E F H I L M N O P R S T U V W X misc
-- A --
| all_identical | Test if all items in a vector or a list are identical. |
| append.rhs.formula | Functions for Querying, Validating and Extracting from Formulas |
| append_rhs.formula | Functions for Querying, Validating and Extracting from Formulas |
| as.control.list | Convert to a control list. |
| as.control.list.control.list | Convert to a control list. |
| as.control.list.list | Convert to a control list. |
| as.linwmatrix | A data matrix with row weights |
| as.linwmatrix.linwmatrix | A data matrix with row weights |
| as.linwmatrix.logwmatrix | A data matrix with row weights |
| as.linwmatrix.matrix | A data matrix with row weights |
| as.logwmatrix | A data matrix with row weights |
| as.logwmatrix.linwmatrix | A data matrix with row weights |
| as.logwmatrix.logwmatrix | A data matrix with row weights |
| as.logwmatrix.matrix | A data matrix with row weights |
| as.term_list | A helper class for list of terms in an formula |
| as.term_list.default | A helper class for list of terms in an formula |
| as.term_list.term_list | A helper class for list of terms in an formula |
| attr | A wrapper for base::attr which defaults to exact matching. |
-- B --
| base_env | Replace an object's environment with a simple, static environment. |
-- C --
| c.term_list | A helper class for list of terms in an formula |
| check.control.class | Ensure that the class of the control list is one of those that can be used by the calling function |
| COLLATE_ALL_MY_CONTROLS_EXPR | Helper functions used by packages to facilitate 'snctrl' updating. |
| collate_controls | Helper functions used by packages to facilitate 'snctrl' updating. |
| colMeans.mcmc.list | Utility operations for 'mcmc.list' objects |
| compress_rows | A generic function to compress a row-weighted table |
| compress_rows.data.frame | "Compress" a data frame. |
| compress_rows.linwmatrix | A data matrix with row weights |
| compress_rows.logwmatrix | A data matrix with row weights |
| control.list.accessor | Named element accessor for ergm control lists |
| control.remap | Overwrite control parameters of one configuration with another. |
-- D --
| decompress_rows | A generic function to compress a row-weighted table |
| decompress_rows.compressed_rows_df | "Compress" a data frame. |
| decompress_rows.wmatrix | A data matrix with row weights |
| default_options | Set 'options()' according to a named list, skipping those already set. |
| deInf | Truncate values of high magnitude in a vector. |
| deprecation-utilities | Utilities to help with deprecating functions. |
| despace | A one-line function to strip whitespace from its argument. |
| diff.control.list | Identify and the differences between two control lists. |
-- E --
| empty_env | Replace an object's environment with a simple, static environment. |
| ERRVL | Return the first argument passed (out of any number) that is not a 'try-error' (result of 'try' encountering an error. |
| eval_lhs.formula | Functions for Querying, Validating and Extracting from Formulas |
| EVL | Convenience functions for handling 'NULL' objects. |
| EVL2 | Convenience functions for handling 'NULL' objects. |
| EVL3 | Convenience functions for handling 'NULL' objects. |
| EVL<- | Convenience functions for handling 'NULL' objects. |
-- F --
| filter_rhs.formula | Functions for Querying, Validating and Extracting from Formulas |
| fixed.pval | Format a p-value in fixed notation. |
| forkTimeout | Evaluate an R expression with a hard time limit by forking a process |
| formula.utilities | Functions for Querying, Validating and Extracting from Formulas |
-- H --
| handle.controls | Handle standard control.*() function semantics. |
-- I --
| is.linwmatrix | A data matrix with row weights |
| is.logwmatrix | A data matrix with row weights |
| is.SPD | Test if the object is a matrix that is symmetric and positive definite |
| is.wmatrix | A data matrix with row weights |
-- L --
| lapply.mcmc.list | Utility operations for 'mcmc.list' objects |
| linwmatrix | A data matrix with row weights |
| list_rhs.formula | Functions for Querying, Validating and Extracting from Formulas |
| list_summands.call | Functions for Querying, Validating and Extracting from Formulas |
| locate_function | Locate a function with a given name and return it and its environment. |
| locate_prefixed_function | Locate a function with a given name and return it and its environment. |
| logspace.utils | Utilities for performing calculations on logarithmic scale. |
| logwmatrix | A data matrix with row weights |
| log_mean_exp | Utilities for performing calculations on logarithmic scale. |
| log_sum_exp | Utilities for performing calculations on logarithmic scale. |
| lrowweights | Set or extract weighted matrix row weights |
| lrowweights.linwmatrix | Set or extract weighted matrix row weights |
| lrowweights.logwmatrix | Set or extract weighted matrix row weights |
| lrowweights<- | Set or extract weighted matrix row weights |
| lrowweights<-.linwmatrix | Set or extract weighted matrix row weights |
| lrowweights<-.logwmatrix | Set or extract weighted matrix row weights |
| lrowweights<-.matrix | Set or extract weighted matrix row weights |
| lweighted.cov | Utilities for performing calculations on logarithmic scale. |
| lweighted.mean | Utilities for performing calculations on logarithmic scale. |
| lweighted.var | Utilities for performing calculations on logarithmic scale. |
-- M --
| mcmc-utilities | Utility operations for 'mcmc.list' objects |
| message_print | 'print' objects to the 'message' output. |
-- N --
| nonsimp.update.formula | Functions for Querying, Validating and Extracting from Formulas |
| nonsimp_update.formula | Functions for Querying, Validating and Extracting from Formulas |
| NVL | Convenience functions for handling 'NULL' objects. |
| NVL2 | Convenience functions for handling 'NULL' objects. |
| NVL3 | Convenience functions for handling 'NULL' objects. |
| NVL<- | Convenience functions for handling 'NULL' objects. |
-- O --
| once | Evaluate a function once for a given input. |
| opttest | Optionally test code depending on environment variable. |
| order | Implement the 'sort' and 'order' methods for 'data.frame' and 'matrix', sorting it in lexicographic order. |
| order.data.frame | Implement the 'sort' and 'order' methods for 'data.frame' and 'matrix', sorting it in lexicographic order. |
| order.default | Implement the 'sort' and 'order' methods for 'data.frame' and 'matrix', sorting it in lexicographic order. |
| order.matrix | Implement the 'sort' and 'order' methods for 'data.frame' and 'matrix', sorting it in lexicographic order. |
-- P --
| paste.and | Concatenates the elements of a vector (optionaly enclosing them in quotation marks or parentheses) adding appropriate punctuation and conjunctions. |
| persistEval | Evaluate an expression, restarting on error |
| persistEvalQ | Evaluate an expression, restarting on error |
| print.control.list | Pretty print the control list |
| print.diff.control.list | Identify and the differences between two control lists. |
| print.linwmatrix | A data matrix with row weights |
| print.logwmatrix | A data matrix with row weights |
| print.term_list | A helper class for list of terms in an formula |
| print.wmatrix | A data matrix with row weights |
-- R --
| rowweights | Set or extract weighted matrix row weights |
| rowweights.linwmatrix | Set or extract weighted matrix row weights |
| rowweights.logwmatrix | Set or extract weighted matrix row weights |
| rowweights<- | Set or extract weighted matrix row weights |
| rowweights<-.linwmatrix | Set or extract weighted matrix row weights |
| rowweights<-.logwmatrix | Set or extract weighted matrix row weights |
| rowweights<-.matrix | Set or extract weighted matrix row weights |
-- S --
| sandwich_solve | Common quadratic forms |
| sandwich_ssolve | Wrappers around matrix algebra functions that pre-_s_cale their arguments |
| set.control.class | Set the class of the control list |
| sginv | Wrappers around matrix algebra functions that pre-_s_cale their arguments |
| simplify_simple | Convert a list to an atomic vector if it consists solely of atomic elements of length 1. |
| snctrl | Statnet Control |
| snctrl-API | Helper functions used by packages to facilitate 'snctrl' updating. |
| snctrl_names | Helper functions used by packages to facilitate 'snctrl' updating. |
| snearPD | Wrappers around matrix algebra functions that pre-_s_cale their arguments |
| sort.data.frame | Implement the 'sort' and 'order' methods for 'data.frame' and 'matrix', sorting it in lexicographic order. |
| split.array | A 'split()' method for 'array' and 'matrix' types on a margin. |
| split.matrix | A 'split()' method for 'array' and 'matrix' types on a margin. |
| srcond | Wrappers around matrix algebra functions that pre-_s_cale their arguments |
| ssolve | Wrappers around matrix algebra functions that pre-_s_cale their arguments |
| statnet.cite | 'CITATION' file utilities for Statnet packages (DEPRECATED) |
| statnet.cite.foot | 'CITATION' file utilities for Statnet packages (DEPRECATED) |
| statnet.cite.head | 'CITATION' file utilities for Statnet packages (DEPRECATED) |
| statnet.cite.pkg | 'CITATION' file utilities for Statnet packages (DEPRECATED) |
| statnetStartupMessage | Construct a "standard" startup message to be printed when the package is loaded. |
| sweep.mcmc.list | Utility operations for 'mcmc.list' objects |
| sweep_cols.matrix | Suptract a elements of a vector from respective columns of a matrix |
-- T --
| term.list.formula | Functions for Querying, Validating and Extracting from Formulas |
| term_list | A helper class for list of terms in an formula |
| trim_env | Make a copy of an environment with just the selected objects. |
| trim_env.default | Make a copy of an environment with just the selected objects. |
| trim_env.environment | Make a copy of an environment with just the selected objects. |
-- U --
| ult | Extract or replace the _ult_imate (last) element of a vector or a list, or an element counting from the end. |
| ult<- | Extract or replace the _ult_imate (last) element of a vector or a list, or an element counting from the end. |
| unused_dots_warning | An error handler for 'rlang::check_dots_used()' that issues a warning that only lists argument names. |
| unwhich | Construct a logical vector with 'TRUE' in specified positions. |
| update.Welford | A Welford accumulator for sample mean and variance |
| UPDATE_MY_SCTRL_EXPR | Helper functions used by packages to facilitate 'snctrl' updating. |
| update_snctrl | Helper functions used by packages to facilitate 'snctrl' updating. |
-- V --
| vector.namesmatch | reorder vector v into order determined by matching the names of its elements to a vector of names |
-- W --
| Welford | A Welford accumulator for sample mean and variance |
| wmatrix | A data matrix with row weights |
| wmatrix_weights | Set or extract weighted matrix row weights |
-- X --
| xAxT | Common quadratic forms |
| xTAx | Common quadratic forms |
| xTAx_qrsolve | Common quadratic forms |
| xTAx_qrssolve | Wrappers around matrix algebra functions that pre-_s_cale their arguments |
| xTAx_solve | Common quadratic forms |
| xTAx_ssolve | Wrappers around matrix algebra functions that pre-_s_cale their arguments |
-- misc --
| $.control.list | Named element accessor for ergm control lists |
| .Deprecate_method | Utilities to help with deprecating functions. |
| .Deprecate_once | Utilities to help with deprecating functions. |
| [.term_list | A helper class for list of terms in an formula |
| [.wmatrix | A data matrix with row weights |
| [<-.wmatrix | A data matrix with row weights |