Tools for Imaging Flow Cytometry
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Documentation for package ‘IFC’ version 0.2.1
Help Pages
| IFC-package | Tools for Imaging Flow Cytometry |
| autoplot | Automatic Parameters Detection for IFC Graphs |
| BatchReport | Batch Generation of Graphical and Statistic Report |
| buildBatch | Batch Builder |
| buildFeature | IFC Feature Coercion |
| buildGraph | IFC Graph Coercion |
| buildPopulation | IFC Population Coercion |
| buildRegion | IFC Region Coercion |
| checksumIFC | IFC Files Checksum |
| data_add_features | Add Feature to IFC_data Object |
| data_add_graphs | Add Graphs to IFC_data Object |
| data_add_pops | Add Population to IFC_data Object |
| data_add_regions | Add Region to IFC_data Object |
| data_rm_features | Remove Features from an IFC_data Object |
| data_rm_graphs | Remove Graph from an IFC_data Object |
| data_rm_pops | Remove Population from an IFC_data Object |
| data_rm_regions | Remove Region from an IFC_data Object |
| data_to_DAF | DAF File Writer |
| DisplayGallery | Gallery Display |
| ExportToBATCH | Batch File Writer |
| ExportToDAF | DAF File Writer |
| ExportToFCS | FCS File Writer |
| ExportToGallery | Gallery Export |
| ExportToNumpy | Numpy Export |
| ExportToReport | Graphical and Statistic Report Generation |
| ExportToXIF | RIF/CIF File Writer |
| ExtractFromDAF | DAF File Reader |
| ExtractFromFCS | FCS File Reader |
| ExtractFromXIF | RIF/CIF File Reader |
| ExtractImages_toBase64 | Shortcut for Batch Images Extraction to Base64 |
| ExtractImages_toFile | Shortcut for Batch Images Extraction to Files |
| ExtractImages_toMatrix | Shortcut for Batch Images Extraction to Matrices/Arrays |
| ExtractMasks_toBase64 | Shortcut for Batch Masks Extraction to Base64 |
| ExtractMasks_toFile | Shortcut for Batch Masks Extraction to Files |
| ExtractMasks_toMatrix | Shortcut for Batch Masks Extraction to Matrices/Arrays |
| gen_altnames | Alternative Names Generator |
| getAborted | Aborted Batch Files Retrieval |
| getFullTag | Image Field Directory Full Tag Retrieval |
| getIFD | RIF/CIF Image Field Directories Extraction |
| getInfo | IFC File Information Extraction |
| getOffsets | RIF/CIF File Image Field Directories Offsets Extraction |
| IFC | Tools for Imaging Flow Cytometry |
| inv_smoothLinLog | Inverse Smooth LinLog Transformation |
| objectCleanse | Object Cleanser |
| objectDisplay | Object Display |
| objectExtract | Object Extraction |
| objectParam | Object Extraction Parameters Definition |
| paletteIFC | R/IDEAS Color Palette Mapping |
| plotGraph | Plot and Stats Computation for IFC Graph |
| popsCompute | IFC_pops Computation |
| popsCopy | Copy Populations from One File to Another File |
| popsGetObjectsIds | IFC_pops Object Numbers |
| popsNetwork | IFC_pops Network Display |
| popsRename | Populations Renaming |
| readFCS | FCS File Parser |
| readIFC | IFC Files Generic Reader |
| smoothLinLog | Smooth LinLog Transformation |
| subsetOffsets | IFC_offset Subsetting |
| writeIFC | IFC Files Generic Writer |