adj_RI |
Adjusted Rand Index (ARI) |
CommKern |
CommKern |
community_allegiance |
Community Allegiance |
community_plot |
Communities by layer plot |
compute_modularity_matrix |
Compute modularity matrix |
compute_multimodal_mod |
Compute multimodal modularity matrix |
consensus_similarity |
Consensus Similarity |
count_pairs |
Count pairs |
degree |
Node degree calculation |
entropy |
Entropy |
ext_distance |
Extrinsic evaluation distance matrix creation |
find_start_temp |
Starting temperature |
get_weights |
Simulated network edge weights |
group_adj_perturb |
Group adjacency matrices |
group_network_perturb |
Simulated group networks |
ham_distance |
Hamiltonian distance matrix creation |
heatbath_multimodal |
Multimodal heatbath algorithm |
hms |
Hierarchical multimodal spinglass algorithm |
kernel |
Distance-based kernel |
matrix_plot |
Functional and Structural Matrix Plot |
matrix_to_df |
Convert matrices to dataframe list for network |
NMI |
Normalized mutual information (NMI) |
purity |
Purity |
SBM_net |
Simulated functional and structural connectivity with nested hierarchical community structure |
score_cont_nonparam |
Nonparametric score function for distance-based kernel and continuous outcome. |
score_cont_semiparam |
Semiparametric score function for distance-based kernel and continuous outcome. |
score_log_nonparam |
Nonparametric score function for distance-based kernel and binary outcome |
score_log_semiparam |
Semiparametric score function for distance-based kernel |
simasd_array |
Simulated Array |
simasd_comm_df |
Simulated partitions of nodes to communities from HMS algorithm |
simasd_covars |
Simulated demographics dataset modeled of a subset of the preprocessed ABIDE database |
simasd_hamil_df |
Simulated Hamiltonian values from HMS algorithm |
simnet_df_perturb |
Simulated network data frame |
sort_pairs |
Sort pairs |
subset_matrix_to_df |
Convert matrices to list of data frames for subnetworks |
tr |
Trace |
up_low |
Bounds of grid search function |
zrand |
Rand z-score |