adj_RI |
Adjusted Rand Index (ARI) |

CommKern |
CommKern |

community_allegiance |
Community Allegiance |

community_plot |
Communities by layer plot |

compute_modularity_matrix |
Compute modularity matrix |

compute_multimodal_mod |
Compute multimodal modularity matrix |

consensus_similarity |
Consensus Similarity |

count_pairs |
Count pairs |

degree |
Node degree calculation |

entropy |
Entropy |

ext_distance |
Extrinsic evaluation distance matrix creation |

find_start_temp |
Starting temperature |

get_weights |
Simulated network edge weights |

group_adj_perturb |
Group adjacency matrices |

group_network_perturb |
Simulated group networks |

ham_distance |
Hamiltonian distance matrix creation |

heatbath_multimodal |
Multimodal heatbath algorithm |

hms |
Hierarchical multimodal spinglass algorithm |

kernel |
Distance-based kernel |

matrix_plot |
Functional and Structural Matrix Plot |

matrix_to_df |
Convert matrices to dataframe list for network |

NMI |
Normalized mutual information (NMI) |

purity |
Purity |

SBM_net |
Simulated functional and structural connectivity with nested hierarchical community structure |

score_cont_nonparam |
Nonparametric score function for distance-based kernel and continuous outcome. |

score_cont_semiparam |
Semiparametric score function for distance-based kernel and continuous outcome. |

score_log_nonparam |
Nonparametric score function for distance-based kernel and binary outcome |

score_log_semiparam |
Semiparametric score function for distance-based kernel |

simasd_array |
Simulated Array |

simasd_comm_df |
Simulated partitions of nodes to communities from HMS algorithm |

simasd_covars |
Simulated demographics dataset modeled of a subset of the preprocessed ABIDE database |

simasd_hamil_df |
Simulated Hamiltonian values from HMS algorithm |

simnet_df_perturb |
Simulated network data frame |

sort_pairs |
Sort pairs |

subset_matrix_to_df |
Convert matrices to list of data frames for subnetworks |

tr |
Trace |

up_low |
Bounds of grid search function |

zrand |
Rand z-score |