Maximum Likelihood Estimation of DNA Methylation and Hydroxymethylation Proportions


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Documentation for package ‘MLML2R’ version 0.3.3

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C_BS_sim C (unconverted) counts from BS
C_OxBS_sim C (unconverted) counts from oxBS
C_TAB_sim C (unconverted) counts from TAB
MLML MLE (maximum likelihood estimates) of 5-mC and 5-hmC levels.
T_BS_sim T (converted) counts from BS
T_OxBS_sim T (converted) counts from oxBS
T_TAB_sim T (converted) counts from TAB