Analytical Methods for Stream DAGs
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Documentation for package ‘streamDAG’ version 1.5
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| A | Arcs of a directed graph |
| A.mult | Raise an adjacency matrix to some power |
| AIMS.node.coords | Nodal coordinates for graphs in the AIMS project |
| arc.pa.from.nodes | Obtain arc stream activity outcomes based on bounding nodes |
| assort | Assortativity |
| avg.efficiency | Local and global efficiency |
| bern.length | Botter and Durighetto Bernoulli stream length |
| beta.posterior | Posterior Beta and Inverse-beta summaries |
| biv.bern | Bivariate Bernoulli Distribution |
| dc_arc_pres_abs | Stream segment presence absence data for Dry Cr. Idaho |
| dc_lengths | Lengths of Dry Creek stream (arc) segments |
| dc_node_pres_abs | Stream node presence absence data for Dry Cr. Idaho |
| degree.dists | Potential degree distributions |
| delete.arcs.pa | Delete arcs based on presence absence data |
| delete.nodes.pa | Delete nodes based on presence absence data |
| dinvbeta | Inverse Beta Distribution |
| efficiency.matrix | Local and global efficiency |
| gj_coords16 | Coordinates of nodes at Gibson Jack Creek, Idaho for a 2016 survey |
| gj_lengths | Lengths of Gibson Jack stream (arc) segments |
| gj_node_pres_abs | Stream node presence absence data for Gibson Jack Idaho |
| gj_node_pres_abs16 | Stream node presence absence data for Gibson Jack Cr. Idaho, for a 2016 survey |
| global.efficiency | Local and global efficiency |
| global.summary | Global Summary |
| harary | Harary Index |
| I.D | Generalized DAG indices |
| ICSL | Integral connectivity scale length (ICSL) |
| imp.closeness | Improved Closeness Centrality |
| isle | Detects and defines islands in a streamDAG |
| jd_lengths | Lengths of Johnson Draw stream (arc) segments |
| jd_lengths_full | Lengths of Johnson Draw stream (arc) segments |
| jd_node_pres_abs | Stream node presence absence data for Johnson Draw Idaho |
| kon_coords | Coordinates of nodes in the Konza Praire dataset |
| kon_lengths | Lengths of Murphy Cr. stream (arc) segments |
| local.summary | local (nodal) summaries of a DAG |
| max_r | Bounds for the correlation of two (or more) Benrnoulli random variables |
| min_r | Bounds for the correlation of two (or more) Benrnoulli random variables |
| multi.path.visibility | Path Visibilities |
| mur_arc_pres_abs | Stream segment presence absence data for Murphy Cr. Idaho |
| mur_coords | Coordinates of nodes at Murphy Ck. Idaho |
| mur_lengths | Lengths of Murphy Cr. stream (arc) segments |
| mur_node_pres_abs | Stream node presence absence data for Murphy Cr. Idaho |
| mur_seasons_arc_pa | Simulated seasonal arc presence absence data for Murphy Cr |
| n.sources | Identify source and sink nodes |
| n.tot.paths | Shortest path lengths and number of paths |
| path.lengths.sink | Path Lengths |
| path.visibility | Path Visibilities |
| pinvbeta | Inverse Beta Distribution |
| plot_degree.dist | Plot degree distributions |
| R.bounds | Bounds for the correlation of two (or more) Benrnoulli random variables |
| rinvbeta | Inverse Beta Distribution |
| sink.G | Strahler or Shreve stream order of a stream DAG |
| size.intact.to.node | Size of intact network that feeds into the sink or a particular node |
| size.intact.to.sink | Size of intact network that feeds into the sink or a particular node |
| sources | Identify source and sink nodes |
| spath.lengths | Shortest path lengths and number of paths |
| spatial.plot | Spatial plot of an igraph object or stream shapefile |
| spatial.plot.sf | Spatial plot of an igraph object or stream shapefile |
| stream.order | Strahler or Shreve stream order of a stream DAG |
| streamDAGs | Stream DAG datasets |
| visibility | Path Visibilities |