AIC.coalescentMCMC |
Run MCMC for Coalescent Trees |
anova.coalescentMCMC |
Run MCMC for Coalescent Trees |
BIC.coalescentMCMC |
Run MCMC for Coalescent Trees |
cleanMCMCtrees |
Managing List of Trees From MCMC |
coalescentMCMC |
Run MCMC for Coalescent Trees |
dcoal |
Density Functions of Some Time-Dependent Coalescent Models |
dcoal.linear |
Density Functions of Some Time-Dependent Coalescent Models |
dcoal.step |
Density Functions of Some Time-Dependent Coalescent Models |
dcoal.time |
Density Functions of Some Time-Dependent Coalescent Models |
dcoal.time2 |
Density Functions of Some Time-Dependent Coalescent Models |
getLastTree |
Managing List of Trees From MCMC |
getMCMCstats |
Managing List of Trees From MCMC |
getMCMCtrees |
Managing List of Trees From MCMC |
logLik.coalescentMCMC |
Run MCMC for Coalescent Trees |
NeighborhoodRearrangement |
Trees Operators for Running MCMC |
plotTHETA |
Plot THETA From coalescentMCMC Output |
proba.coalescent |
Probability of Coalescence |
saveMCMCtrees |
Managing List of Trees From MCMC |
sim.coalescent |
Coalescent Simulation and Visualisation |
subset.coalescentMCMC |
Subset MCMC Output |
TipInterchange |
Trees Operators for Running MCMC |
treeOperators |
Trees Operators for Running MCMC |