MCMC Algorithms for the Coalescent
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Documentation for package ‘coalescentMCMC’ version 0.4-4
Help Pages
| AIC.coalescentMCMC | Run MCMC for Coalescent Trees |
| anova.coalescentMCMC | Run MCMC for Coalescent Trees |
| BIC.coalescentMCMC | Run MCMC for Coalescent Trees |
| cleanMCMCtrees | Managing List of Trees From MCMC |
| coalescentMCMC | Run MCMC for Coalescent Trees |
| dcoal | Density Functions of Some Time-Dependent Coalescent Models |
| dcoal.linear | Density Functions of Some Time-Dependent Coalescent Models |
| dcoal.step | Density Functions of Some Time-Dependent Coalescent Models |
| dcoal.time | Density Functions of Some Time-Dependent Coalescent Models |
| dcoal.time2 | Density Functions of Some Time-Dependent Coalescent Models |
| getLastTree | Managing List of Trees From MCMC |
| getMCMCstats | Managing List of Trees From MCMC |
| getMCMCtrees | Managing List of Trees From MCMC |
| logLik.coalescentMCMC | Run MCMC for Coalescent Trees |
| NeighborhoodRearrangement | Trees Operators for Running MCMC |
| plotTHETA | Plot THETA From coalescentMCMC Output |
| proba.coalescent | Probability of Coalescence |
| saveMCMCtrees | Managing List of Trees From MCMC |
| sim.coalescent | Coalescent Simulation and Visualisation |
| subset.coalescentMCMC | Subset MCMC Output |
| TipInterchange | Trees Operators for Running MCMC |
| treeOperators | Trees Operators for Running MCMC |