Analytical Tools for Radiation Oncology

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Documentation for package ‘RadOnc’ version 1.1.8

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A C D G I J L M N P Q R S T V W Z misc

RadOnc-package Analytical Tools for Radiation Oncology

-- A --

as.list-method Class '"DVH.list"'
as.list-method Class '"structure.list"'

-- C --

c-method Class '"DVH"'
c-method Class '"DVH.list"'
c-method Class '"structure.list"'
c-method Class '"structure3D"'
c-method Class '"zDVH"'
calculate.DVH Calculate DVH data for one or more structure(s) using a dose grid
calculate.DVH-method Calculate DVH data for one or more structure(s) using a dose grid
calculate.DVH-methods Calculate DVH data for one or more structure(s) using a dose grid
compareStructures Compare Axially-Defined Three-Dimensional Structures
compareStructures.axial Compare Axially-Defined Three-Dimensional Structures
compareStructures.EMD Compare Axially-Defined Three-Dimensional Structures
compareStructures.grid Compare Axially-Defined Three-Dimensional Structures
compareStructures.hausdorff Compare Axially-Defined Three-Dimensional Structures
compareStructures.surface Compare Axially-Defined Three-Dimensional Structures
cord DVH data for 'John Doe' and 'Jane Doe'; 3D structural data for 'cord', 'mandible', and 'teeth'; RT data for 'Jane Doe'; and a zDVH object for 'stomach'

-- D --

dim-method Class '"structure3D"'
DVH Class '"DVH"'
DVH-class Class '"DVH"'
DVH.list Class '"DVH.list"'
DVH.list-class Class '"DVH.list"'

-- G --

get.HU Extract Hounsfield Unit (HU) data for one or more structure(s) from a CT image
get.HU-method Extract Hounsfield Unit (HU) data for one or more structure(s) from a CT image
get.HU-methods Extract Hounsfield Unit (HU) data for one or more structure(s) from a CT image
gEUD Generalized Equivalent Uniform Dose (gEUD) Calculation
gEUD-method Generalized Equivalent Uniform Dose (gEUD) Calculation
gEUD-methods Generalized Equivalent Uniform Dose (gEUD) Calculation

-- I --

initialize-method Class '"DVH"'
initialize-method Class '"DVH.list"'
initialize-method Class '"structure.list"'
initialize-method Class '"zDVH"'

-- J --

janedoe DVH data for 'John Doe' and 'Jane Doe'; 3D structural data for 'cord', 'mandible', and 'teeth'; RT data for 'Jane Doe'; and a zDVH object for 'stomach'
janedoe.RTdata DVH data for 'John Doe' and 'Jane Doe'; 3D structural data for 'cord', 'mandible', and 'teeth'; RT data for 'Jane Doe'; and a zDVH object for 'stomach'
johndoe DVH data for 'John Doe' and 'Jane Doe'; 3D structural data for 'cord', 'mandible', and 'teeth'; RT data for 'Jane Doe'; and a zDVH object for 'stomach'

-- L --

lapply-method Class '"DVH.list"'
lapply-method Class '"structure.list"'
length-method Class '"DVH.list"'
length-method Class '"structure.list"'
lines-method Class '"DVH"'
LQE Linear Quadratic Extrapolated (LQE) Dose Conversion
LQE-method Linear Quadratic Extrapolated (LQE) Dose Conversion
LQE-methods Linear Quadratic Extrapolated (LQE) Dose Conversion

-- M --

mad-method Class '"DVH.list"'
mandible DVH data for 'John Doe' and 'Jane Doe'; 3D structural data for 'cord', 'mandible', and 'teeth'; RT data for 'Jane Doe'; and a zDVH object for 'stomach'
max-method Class '"DVH"'
max-method Class '"DVH.list"'
max-method Class '"zDVH"'
mean-method Class '"DVH"'
mean-method Class '"DVH.list"'
mean-method Class '"zDVH"'
median-method Class '"DVH.list"'
min-method Class '"DVH"'
min-method Class '"DVH.list"'
min-method Class '"zDVH"'

-- N --

names-method Class '"DVH"'
names-method Class '"DVH.list"'
names-method Class '"RTdata"'
names-method Class '"structure.list"'
names-method Class '"structure3D"'
names-method Class '"zDVH"'
names<--method Class '"DVH"'
names<--method Class '"DVH.list"'
names<--method Class '"RTdata"'
names<--method Class '"structure.list"'
names<--method Class '"structure3D"'
names<--method Class '"zDVH"'

-- P --

plot-method Class '"DVH"'
plot-method Class '"DVH.list"'
plot-method Additional Methods for Function 'plot' in Package 'graphics'
plot-methods Additional Methods for Function 'plot' in Package 'graphics'
plot.DVH Additional Methods for Function 'plot' in Package 'graphics'
plot.DVH.list Additional Methods for Function 'plot' in Package 'graphics'
plot.zDVH Additional Methods for Function 'plot' in Package 'graphics'
points-method Class '"DVH"'
print-method Class '"DVH"'
print-method Class '"DVH.list"'
print-method Class '"RTdata"'
print-method Class '"structure.list"'
print-method Class '"structure3D"'
print-method Class '"zDVH"'

-- Q --

quantile-method Class '"DVH.list"'

-- R --

RadOnc Analytical Tools for Radiation Oncology
RadOnc-data DVH data for 'John Doe' and 'Jane Doe'; 3D structural data for 'cord', 'mandible', and 'teeth'; RT data for 'Jane Doe'; and a zDVH object for 'stomach'
range-method Class '"DVH"'
range-method Class '"DVH.list"'
range-method Class '"structure.list"'
range-method Class '"structure3D"'
read.DICOM.RT Read DICOM-RT data from an input directory
read.DVH Read DVH data from input file
rev-method Class '"DVH.list"'
rev-method Class '"structure.list"'
RTdata-class Class '"RTdata"'

-- S --

sd-method Class '"DVH.list"'
show-method Class '"DVH"'
show-method Class '"DVH.list"'
show-method Class '"RTdata"'
show-method Class '"structure.list"'
show-method Class '"structure3D"'
show-method Class '"zDVH"'
stomach DVH data for 'John Doe' and 'Jane Doe'; 3D structural data for 'cord', 'mandible', and 'teeth'; RT data for 'Jane Doe'; and a zDVH object for 'stomach'
structure.list-class Class '"structure.list"'
structure3D-class Class '"structure3D"'
subset-method Extract a subset of a larger DVH list
subset-methods Extract a subset of a larger DVH list
subset.DVH.list Extract a subset of a larger DVH list
sum-method Class '"DVH"'
sum-method Class '"DVH.list"'

-- T --

t.test-method Class '"DVH.list"'
teeth DVH data for 'John Doe' and 'Jane Doe'; 3D structural data for 'cord', 'mandible', and 'teeth'; RT data for 'Jane Doe'; and a zDVH object for 'stomach'

-- V --

var-method Class '"DVH.list"'

-- W --

wilcox.test-method Class '"DVH.list"'

-- Z --

zDVH Class '"zDVH"'
zDVH-class Class '"zDVH"'

-- misc --

$-method Class '"DVH"'
$-method Class '"DVH.list"'
$-method Class '"RTdata"'
$-method Class '"structure.list"'
$-method Class '"structure3D"'
$-method Class '"zDVH"'
$<--method Class '"DVH"'
$<--method Class '"RTdata"'
$<--method Class '"structure3D"'
$<--method Class '"zDVH"'
[-method Class '"DVH"'
[-method Class '"DVH.list"'
[-method Class '"structure.list"'
[-method Class '"zDVH"'
[[-method Class '"DVH.list"'
[[-method Class '"structure.list"'
[[<--method Class '"DVH.list"'
[[<--method Class '"structure.list"'