Create HIDECAN Plots for Visualising Genome-Wide Association
Studies and Differential Expression Results
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Documentation for package ‘hidecan’ version 1.1.0
Help Pages
| .check_cols | Checks whether some columns are present in a tibble |
| .compute_chrom_length_genes | Computes chromosomes' length for a tibble of genes |
| apply_threshold | Filters GWAS or DE results based on a threshold |
| apply_threshold.CAN_data | Filters GWAS or DE results based on a threshold |
| apply_threshold.default | Filters GWAS or DE results based on a threshold |
| apply_threshold.DE_data | Filters GWAS or DE results based on a threshold |
| apply_threshold.GWAS_data | Filters GWAS or DE results based on a threshold |
| CAN_data | Creates a 'CAN_data' object |
| combine_chrom_length | Computes chromosomes' length from list |
| compute_chrom_length | Computes chromosomes' length |
| compute_chrom_length.CAN_data | Computes chromosomes' length |
| compute_chrom_length.DE_data | Computes chromosomes' length |
| compute_chrom_length.GWAS_data | Computes chromosomes' length |
| create_hidecan_plot | Creates a HIDECAN plot |
| DE_data | Creates a 'DE_data' object |
| get_example_data | Example dataset |
| GWAS_data | Creates a 'GWAS_data' object |
| GWAS_data_from_gwaspoly | Extracts information from GWASpoly output |
| hidecan_plot | Wrapper to create a HIDECAN plot |
| hidecan_plot_from_gwaspoly | Creates a HIDECAN plot from GWASpoly output |
| new_CAN_data | 'CAN_data' constructor |
| new_DE_data | 'DE_data' constructor |
| new_GWAS_data | 'GWAS_data' constructor |
| run_hidecan_shiny | Launches the HIDECAN shiny app |
| validate_CAN_data | Checks validity of input for 'CAN_data' constructor |
| validate_DE_data | Checks validity of input for 'DE_data' constructor |
| validate_GWAS_data | Checks validity of input for 'GWAS_data' constructor |