Importing Real-Time Thermo Cycler (qPCR) Data from RDML Format Files


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Documentation for package ‘RDML’ version 1.0

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adpsType adpsType R6 class.
annotationType annotationType R6 class.
as.character.idType Convert 'idType' object to 'character'
as.character.reactIdType Convert 'reactIdType' object to 'character'
AsDendrogram 'RDML$AsDendrogram()' wrapper
AsTable 'RDML$AsTable()' wrapper
baseTemperatureType baseTemperatureType R6 class.
cdnaSynthesisMethodType cdnaSynthesisMethodType R6 class.
commercialAssayType commercialAssayType R6 class.
cqDetectionMethodType cqDetectionMethodType R6 class.
dataCollectionSoftwareType dataCollectionSoftwareType R6 class.
dataType dataType R6 class.
documentationType documentationType R6 class.
dyeType dyeType R6 class.
enumType enumType R6 class.
experimenterType experimenterType R6 class.
experimentType experimentType R6 class.
GetFData 'RDML$GetFData()' wrapper
gradientType gradientType R6 class.
idReferencesType idReferencesType R6 class.
idType idType R6 class.
labelFormatType labelFormatType R6 class.
lidOpenType lidOpenType R6 class.
loopType loopType R6 class.
mdpsType mdpsType R6 class.
measureType measureType R6 class.
MergeRDMLs Merges 'RDML' objects
new Creates new instance of 'RDML' class object
nucleotideType nucleotideType R6 class.
oligoType oligoType R6 class.
pauseType pauseType R6 class.
pcrFormatType pcrFormatType R6 class.
primingMethodType primingMethodType R6 class.
quantityType quantityType R6 class.
quantityUnitType quantityUnitType R6 class.
RDML R6 class 'RDML' - contains methods to read and overview fluorescence data from RDML v1.1 and v1.2 format files
RDML.AsDendrogram Represents structure of 'RDML' file as dendrogram
RDML.AsTable Represents fields of 'RDML' object as 'data.frame'
RDML.GetFData Gets fluorescence data vectors from 'RDML' object
RDML.new Creates new instance of 'RDML' class object
RDML.SetFData Sets fluorescence data vectors to 'RDML' object
rdmlBaseType Base R6 class for RDML package.
rdmlEdit RDML Editor Graphical User Interface
rdmlIdType rdmlIdType R6 class.
reactIdType reactIdType R6 class.
reactType reactType R6 class.
runType runType R6 class.
sampleType sampleType R6 class.
sampleTypeType sampleTypeType R6 class.
sequencesType sequencesType R6 class.
SetFData 'RDML$SetFData()' wrapper
stepType stepType R6 class.
targetType targetType R6 class.
targetTypeType targetTypeType R6 class.
temperatureType temperatureType R6 class.
templateQuantityType templateQuantityType R6 class.
thermalCyclingConditionsType thermalCyclingConditionsType R6 class.
xRefType xRefType R6 class.
[.GetFData Extract data points from 'RDML' object
[.RDML Extract data points from 'RDML' object