all_trees |
Simulated Tree Data with Different Proximity Parameter Value |
apicomplexa |
Apicomplexa gene trees sample data set. |
as.matrix.multiPhylo |
Vectorize a Set of Phylognetic Trees |
as.vector.phylo |
Vectorize a Phylogenetic Tree |
coef.cv.tropsvm |
Extract Optimal Tropical Hyperplane from a cv.tropsvm object |
coef.tropsvm |
Extract Optimal Tropical Hyperplane from a tropsvm object |
cv.tropsvm |
Cross-Validation for Tropical Support Vector Machines |
lungfish |
Coelacanths genome and transcriptome data |
plot.troppca |
Plot the Tropical Principal Components with Data Projections |
predict.cv.tropsvm |
Predict Method for Tropical Support Vector Machines based on Cross-Validation |
predict.tropsvm |
Predict Method for Tropical Support Vector Machines |
read.nexus.to.data.matrix |
Read NEXUS-formatted trees from two categories into a data matrix |
read.tree.to.data.matrix |
Read Newick-formatted trees in two categories into a data matrix |
sim_trees |
Simulated Tree Data |
summary.cv.tropsvm |
Summarize an Analysis of Cross-Validated Tropical Support Vector Machine |
tropdet |
Tropical Determinant of a Matrix |
tropFW |
Tropical Fermat-Weber Point |
troppca.linsp |
Tropical Principal Component Analysis by Tropical Linear Space |
troppca.linsp2poly |
Tropical Principal Component Analysis by Polytope Converted from Linear Space |
troppca.poly |
Tropical Principal Component Analysis by Tropical Polytope |
tropproj.linsp |
Projection on Tropical Linear Space |
tropproj.poly |
Projection on Tropical Polytope |
tropsvm |
Tropical Support Vector Machines |