Knockoffs for Hidden Markov Models and Genetic Data
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Documentation for package ‘SNPknock’ version 0.8.2
Help Pages
| knockoffDMC | Group knockoffs of discrete Markov chains |
| knockoffGenotypes | Group-knockoffs of unphased genotypes |
| knockoffHaplotypes | Group-knockoffs of phased haplotypes |
| knockoffHMM | Group knockoffs of hidden Markov models |
| loadHMM | Load HMM parameters fitted by fastPHASE |
| runFastPhase | Fit an HMM to genetic data using fastPHASE |
| sampleDMC | Sample discrete Markov chains |
| sampleHMM | Sample hidden Markov models |
| writeXtoInp | Convert genotypes X into the fastPHASE input format |