Tools to Analyse RFLP Data

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Documentation for package ‘RFLPtools’ version 2.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

RFLPtools-package	Tools To Analyse RFLP-Data
BLASTdata	Example data set for BLAST data
diffDist	Distance Matrix Computation
FragMatch	Compute matches for RFLP data via FragMatch.
germ	Compute matches for RFLP data via GERM.
linCombDist	Linear Combination of Distances
newDataGerm	Example data set from GERM software
nrBands	Function to compute number of bands.
read.blast	Read BLAST data
read.rflp	Read RFLP data
refDataGerm	Example data set from GERM software
RFLPcombine	Combine RFLP data sets
RFLPdata	Example data set for RFLP data
RFLPdist	Compute distances for RFLP data.
RFLPdist2	Compute distances for RFLP data.
RFLPdist2ref	Compute distance between RFLP data and RFLP reference data.
RFLPlod	Remove bands below LOD
RFLPplot	Function to plot RFLP data.
RFLPqc	Quality control for RFLP data
RFLPref	Example data set for RFLP reference
RFLPrefplot	Function for a visual comparison of RFLP samples with reference samples.
RFLPtools	Tools To Analyse RFLP-Data
sim2dist	Convert similarity matrix to dist object.
simMatrix	Similarity matrix for BLAST data.
simulateRFLPdata	Simulate RFLP data.
write.hclust	Cut a hierarchical cluster tree and write cluster identifiers to a text file.