RFLPtools-package |
Tools To Analyse RFLP-Data |
BLASTdata |
Example data set for BLAST data |
diffDist |
Distance Matrix Computation |
FragMatch |
Compute matches for RFLP data via FragMatch. |
germ |
Compute matches for RFLP data via GERM. |
linCombDist |
Linear Combination of Distances |
newDataGerm |
Example data set from GERM software |
nrBands |
Function to compute number of bands. |
read.blast |
Read BLAST data |
read.rflp |
Read RFLP data |
refDataGerm |
Example data set from GERM software |
RFLPcombine |
Combine RFLP data sets |
RFLPdata |
Example data set for RFLP data |
RFLPdist |
Compute distances for RFLP data. |
RFLPdist2 |
Compute distances for RFLP data. |
RFLPdist2ref |
Compute distance between RFLP data and RFLP reference data. |
RFLPlod |
Remove bands below LOD |
RFLPplot |
Function to plot RFLP data. |
RFLPqc |
Quality control for RFLP data |
RFLPref |
Example data set for RFLP reference |
RFLPrefplot |
Function for a visual comparison of RFLP samples with reference samples. |
RFLPtools |
Tools To Analyse RFLP-Data |
sim2dist |
Convert similarity matrix to dist object. |
simMatrix |
Similarity matrix for BLAST data. |
simulateRFLPdata |
Simulate RFLP data. |
write.hclust |
Cut a hierarchical cluster tree and write cluster identifiers to a text file. |