'REST' 'API' Client for the 'NHGRI'-'EBI' 'GWAS' Catalog
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Documentation for package ‘gwasrapidd’ version 0.99.17
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| %>% | Pipe operator |
| associations-class | An S4 class to represent a set of GWAS Catalog associations |
| associations_ex01 | gwasrapidd entities' examples |
| associations_ex02 | gwasrapidd entities' examples |
| association_to_study | Map an association id to a study id |
| association_to_trait | Map an association id to an EFO trait id |
| association_to_variant | Map an association id to a variant id |
| bind | Bind GWAS Catalog objects |
| cytogenetic_bands | GRCh38 human cytogenetic bands. |
| exists_variant | Check if a variant exists in the Catalog. |
| gc_examples | gwasrapidd entities' examples |
| get_associations | Get GWAS Catalog associations |
| get_child_efo | Get all child terms of this trait in the EFO hierarchy |
| get_metadata | Get GWAS Catalog metadata |
| get_studies | Get GWAS Catalog studies |
| get_traits | Get GWAS Catalog EFO traits |
| get_variants | Get GWAS Catalog variants |
| intersect | Set operations on GWAS Catalog objects. |
| is_ebi_reachable | Is the GWAS Catalog REST API server reachable? |
| n | Number of GWAS Catalog entities |
| n-method | Number of GWAS Catalog entities |
| open_in_dbsnp | Browse dbSNP from SNP identifiers. |
| open_in_gtex | Browse GTEx from SNP identifiers. |
| open_in_gwas_catalog | Browse GWAS Catalog entities from the GWAS Web Graphical User Interface |
| open_in_pubmed | Browse PubMed from PubMed identifiers. |
| setdiff | Set operations on GWAS Catalog objects. |
| setequal | Set operations on GWAS Catalog objects. |
| setop | Set operations on GWAS Catalog objects. |
| studies-class | An S4 class to represent a set of GWAS Catalog studies |
| studies_ex01 | gwasrapidd entities' examples |
| studies_ex02 | gwasrapidd entities' examples |
| study_to_association | Map a study id to an association id |
| study_to_trait | Map a study id to a EFO trait id |
| study_to_variant | Map a study id to a variant id |
| subset-associations | Subset an associations object |
| subset-studies | Subset a studies object |
| subset-traits | Subset a traits object |
| subset-variants | Subset a variants object |
| traits-class | An S4 class to represent a set of GWAS Catalog EFO traits. |
| traits_ex01 | gwasrapidd entities' examples |
| traits_ex02 | gwasrapidd entities' examples |
| trait_to_association | Map an EFO trait id to an association id |
| trait_to_study | Map an EFO trait id to a study id |
| trait_to_variant | Map an EFO trait id to a variant id |
| union | Set operations on GWAS Catalog objects. |
| variants-class | An S4 class to represent a set of GWAS Catalog variants |
| variants_ex01 | gwasrapidd entities' examples |
| variants_ex02 | gwasrapidd entities' examples |
| variant_to_association | Map a variant id to an association id |
| variant_to_study | Map a variant id to a study id |
| variant_to_trait | Map a variant id to an EFO trait |
| write_xlsx | Export a GWAS Catalog object to xlsx |
| [-method | Subset an associations object |
| [-method | Subset a studies object |
| [-method | Subset a traits object |
| [-method | Subset a variants object |