%>% |
Pipe operator |
associations-class |
An S4 class to represent a set of GWAS Catalog associations |
associations_ex01 |
gwasrapidd entities' examples |
associations_ex02 |
gwasrapidd entities' examples |
association_to_study |
Map an association id to a study id |
association_to_trait |
Map an association id to an EFO trait id |
association_to_variant |
Map an association id to a variant id |
bind |
Bind GWAS Catalog objects |
cytogenetic_bands |
GRCh38 human cytogenetic bands. |
exists_variant |
Check if a variant exists in the Catalog. |
gc_examples |
gwasrapidd entities' examples |
get_associations |
Get GWAS Catalog associations |
get_child_efo |
Get all child terms of this trait in the EFO hierarchy |
get_metadata |
Get GWAS Catalog metadata |
get_studies |
Get GWAS Catalog studies |
get_traits |
Get GWAS Catalog EFO traits |
get_variants |
Get GWAS Catalog variants |
intersect |
Set operations on GWAS Catalog objects. |
is_ebi_reachable |
Is the GWAS Catalog REST API server reachable? |
n |
Number of GWAS Catalog entities |
n-method |
Number of GWAS Catalog entities |
open_in_dbsnp |
Browse dbSNP from SNP identifiers. |
open_in_gtex |
Browse GTEx from SNP identifiers. |
open_in_gwas_catalog |
Browse GWAS Catalog entities from the GWAS Web Graphical User Interface |
open_in_pubmed |
Browse PubMed from PubMed identifiers. |
setdiff |
Set operations on GWAS Catalog objects. |
setequal |
Set operations on GWAS Catalog objects. |
setop |
Set operations on GWAS Catalog objects. |
studies-class |
An S4 class to represent a set of GWAS Catalog studies |
studies_ex01 |
gwasrapidd entities' examples |
studies_ex02 |
gwasrapidd entities' examples |
study_to_association |
Map a study id to an association id |
study_to_trait |
Map a study id to a EFO trait id |
study_to_variant |
Map a study id to a variant id |
subset-associations |
Subset an associations object |
subset-studies |
Subset a studies object |
subset-traits |
Subset a traits object |
subset-variants |
Subset a variants object |
traits-class |
An S4 class to represent a set of GWAS Catalog EFO traits. |
traits_ex01 |
gwasrapidd entities' examples |
traits_ex02 |
gwasrapidd entities' examples |
trait_to_association |
Map an EFO trait id to an association id |
trait_to_study |
Map an EFO trait id to a study id |
trait_to_variant |
Map an EFO trait id to a variant id |
union |
Set operations on GWAS Catalog objects. |
variants-class |
An S4 class to represent a set of GWAS Catalog variants |
variants_ex01 |
gwasrapidd entities' examples |
variants_ex02 |
gwasrapidd entities' examples |
variant_to_association |
Map a variant id to an association id |
variant_to_study |
Map a variant id to a study id |
variant_to_trait |
Map a variant id to an EFO trait |
write_xlsx |
Export a GWAS Catalog object to xlsx |
[-method |
Subset an associations object |
[-method |
Subset a studies object |
[-method |
Subset a traits object |
[-method |
Subset a variants object |