alignment_info |
Sequence Alignment and Analysis |
bubble_plot_count |
Bubble Plot Count Function |
bubble_plot_percentage |
Bubble Plot Percentage Function |
clustering_average_similarity |
Perform Hierarchical Clustering for average similarity matrix |
clustering_percent_similarity |
Perform Hierarchical Clustering for Percent Similarity |
compute_average_similarity_matrix |
Compute Average Similarity Matrix |
data_sampling |
Samples data from each SampleID group if specified, otherwise uses the final data. |
expand_accession_ranges |
This function expands accession number ranges, creating a data frame with sample and accession numbers. |
generate_heatmaps |
Generate Heatmaps |
get_sequence_information |
Retrieves sequence information for a given list of accessions. |
preprocess_for_alignment |
Preprocesses data for sequence alignment. |
SampleID_vs_NumSequences |
Plots the number of sequences and the probability of sequences per SampleID. |
tree_average_similarity |
Generate Phylogenetic Tree and Color Palette for Average Similarity |
tree_percent_similarity |
Generate Phylogenetic Tree and Color Palette for Percent Similarity Matrix |
write_fasta |
Writes a data frame to a FASTA file. |