Mathematical Modelling of (Dynamic) Microbial Inactivation

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Documentation for package ‘bioinactivation’ version 1.2.3

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

Arrhenius_iso	Isothermal Arrhenius model
Bigelow_iso	Isothermal Bigelow's Model
build_temperature_interpolator	Continuum Interpolation of Discrete Temperatures Values
check_model_params	Correctness Check of Model Parameters
dArrhenius_model	First derivative of the Arrhenius model
dBigelow_model	First Derivate of the Linear Bigelow Model
dGeeraerd_model	First Derivate of Geeraerd's Model
dMafart_model	First Derivate of the Weibull-Mafart Model
dMetselaar_model	First Derivate of the Metselaar Model
dPeleg_model	First Derivate of the Weibull-Peleg Model
dynamic_inactivation	Example Dynamic Inactivation of a Microorganis
fit_dynamic_inactivation	Fitting of Dynamic Inactivation Models
fit_inactivation_MCMC	Fitting of dynamic inactivation with MCMC
fit_isothermal_inactivation	Fit of Isothermal Experiments
get_isothermal_model_data	Isothermal Model Data
get_model_data	Mapping of Simulation Model Functions
get_prediction_cost	Error of the Prediction of Microbial Inactivation
goodness_dyna	Goodness of fit for Dynamic fits
goodness_iso	Goodness of fit for Isothermal fits
goodness_MCMC	Goodness of fit for MCMC fits
goodness_of_fit	Goodness of fit for microbial inactivation models
is.FitInactivation	Test of FitInactivation object
is.FitInactivationMCMC	Test of FitInactivationMCMC object
is.IsoFitInactivation	Test of IsoFitInactivation object
is.PredInactivationMCMC	Test of PredInactivationMCMC object
is.SimulInactivation	Test of SimulInactivation object
isothermal_inactivation	Example Isothermal Inactivation of a Microorganis
laterosporus_dyna	Example Dynamic Inactivation of a Laterosporus
laterosporus_iso	Example Isothermal Inactivation of a Laterosporus
Metselaar_iso	Isothermal Metselaar model
plot.FitInactivation	Plot of FitInactivation Object
plot.FitInactivationMCMC	Plot of FitInactivationMCMC Object
plot.IsoFitInactivation	Plot of IsoFitInactivation Object
plot.PredInactivationMCMC	Plot of PredInactivationMCMC Object
plot.SimulInactivation	Plot of SimulInactivation Object
predict_inactivation	Prediction of Dynamic Inactivation
predict_inactivation_MCMC	Dynamic Prediction Intervals from a Monte Carlo Adjustment
sample_dynaFit	Random sample of the parameters of a FitInactivation object
sample_IsoFit	Random sample of the parameters of a IsoFitInactivation object
sample_MCMCfit	Random sample of the parameters of a FitInactivationMCMC object
summary.FitInactivation	Summary of a FitInactivation object
summary.FitInactivationMCMC	Summary of a FitInactivationMCMC object
summary.IsoFitInactivation	Summary of a IsoFitInactivation object
time_to_logreduction	Time to reach X log reductions
WeibullMafart_iso	Isothermal Weibull-Mafart Model
WeibullPeleg_iso	Isothermal Weibull-Peleg Model