Create Pharmacometric Models

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Documentation for package ‘pmxcode’ version 0.1.3

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

align_annotations	Auto indent mrgsolve code
align_tags	Auto indent NONMEM code tags
areTruthy	Multi-argument version of isTruthy
check_covariate_table	Check covariate definition table
check_incomplete_covariate_table	Check if covariate definition table contains rows with incomplete data
convert_reference_code	Convert reference code for univariate model creation
create_univariate_models	Generate univariate model code
file_exists	Determines if a file path exists
get_code	Creation of model code
get_correlation_table	Convert of covariance matrix into a 0/1 correlation map table
get_derived_parms_code	Get lines of code for derived parameters
get_individual_parm_code	Get line of code for individual parameter value
get_init_code	Get compartment intialization block
get_mrgsolve_code	Creation of mrgsolve code
get_mrg_individual_parm_code	Get line of code for individual parameter value
get_mrg_parms_code	Get mrgsolve model parameter code lines as list
get_ncmts	Get the number of PK and PD compartments
get_nonmem_blocks	Get NONMEM code blocks
get_nonmem_code	Creation of NONMEM code
get_parms_code	Get NONMEM model parameter code lines as list
get_preamble_code	Get lines of preamble code for transit compartment absorption model and delayed dosing records
get_scaling_code	Get code lines for scaling and bioavailability
get_theta_number	Get number of THETA parameters
hot_to_r_raw	Convert covariate handsontable data to R data.frame without factor
is_EDB	Determine if a square matrix is of type block, band or error
new_model_server	New model module
notTruthy	Opposite of areTruthy
replace_abbreviated	Replacement of @ABBREVIATED tag
replace_data	Replacement of @DATA tag
replace_des	Replace @DES tag
replace_error	Replace @ERROR tag
replace_input	Replacement of @INPUT tag
replace_model	Replace @MODEL tag
replace_mrg_capture	Replacement of @CAPTURE tag
replace_mrg_cmt	Replacement of @CMT tag
replace_mrg_global	Replacement of @GLOBAL tag
replace_mrg_main_pred	Replace @MAIN or @PRED tags
replace_mrg_ode	Replacement of @ODE tag
replace_mrg_omega	Replacement of @OMEGA tag
replace_mrg_param	Replacement of @PARAM tag
replace_mrg_plugin	Replacement of @PLUGIN tag
replace_mrg_sigma	Replacement of @SIGMA tag
replace_mrg_table	Replacement of @TABLE tag
replace_nmext	Replacement of @NMEXT tag
replace_omega	Replacement of @OMEGA tag
replace_path	Replacement of @PATH tag
replace_pk_pred	Replace @PK and @PRED tags
replace_prior	Replacement of @PRIOR tag
replace_problem	Replacement of @PROB1 and @PROB2 tags
replace_purpose	Replacement of @PURPOSE tag
replace_sigma	Replacement of @SIGMA tag
replace_subroutine	Replacement of @SUBROUTINE tag
replace_table	Replace @TABLE tag
replace_tags	Replace $TAGs tag
replace_task	Replace @TASK tag
replace_theta	Replacement of @THETA tag
resources	Load resource files
run_app	Run the Shiny Application
tenvars	Format variables by lines of 10.