align_annotations |
Auto indent mrgsolve code |
align_tags |
Auto indent NONMEM code tags |
areTruthy |
Multi-argument version of isTruthy |
check_covariate_table |
Check covariate definition table |
check_incomplete_covariate_table |
Check if covariate definition table contains rows with incomplete data |
convert_reference_code |
Convert reference code for univariate model creation |
create_univariate_models |
Generate univariate model code |
file_exists |
Determines if a file path exists |
get_code |
Creation of model code |
get_correlation_table |
Convert of covariance matrix into a 0/1 correlation map table |
get_derived_parms_code |
Get lines of code for derived parameters |
get_individual_parm_code |
Get line of code for individual parameter value |
get_init_code |
Get compartment intialization block |
get_mrgsolve_code |
Creation of mrgsolve code |
get_mrg_individual_parm_code |
Get line of code for individual parameter value |
get_mrg_parms_code |
Get mrgsolve model parameter code lines as list |
get_ncmts |
Get the number of PK and PD compartments |
get_nonmem_blocks |
Get NONMEM code blocks |
get_nonmem_code |
Creation of NONMEM code |
get_parms_code |
Get NONMEM model parameter code lines as list |
get_preamble_code |
Get lines of preamble code for transit compartment absorption model and delayed dosing records |
get_scaling_code |
Get code lines for scaling and bioavailability |
get_theta_number |
Get number of THETA parameters |
hot_to_r_raw |
Convert covariate handsontable data to R data.frame without factor |
is_EDB |
Determine if a square matrix is of type block, band or error |
new_model_server |
New model module |
notTruthy |
Opposite of areTruthy |
replace_abbreviated |
Replacement of @ABBREVIATED tag |
replace_data |
Replacement of @DATA tag |
replace_des |
Replace @DES tag |
replace_error |
Replace @ERROR tag |
replace_input |
Replacement of @INPUT tag |
replace_model |
Replace @MODEL tag |
replace_mrg_capture |
Replacement of @CAPTURE tag |
replace_mrg_cmt |
Replacement of @CMT tag |
replace_mrg_global |
Replacement of @GLOBAL tag |
replace_mrg_main_pred |
Replace @MAIN or @PRED tags |
replace_mrg_ode |
Replacement of @ODE tag |
replace_mrg_omega |
Replacement of @OMEGA tag |
replace_mrg_param |
Replacement of @PARAM tag |
replace_mrg_plugin |
Replacement of @PLUGIN tag |
replace_mrg_sigma |
Replacement of @SIGMA tag |
replace_mrg_table |
Replacement of @TABLE tag |
replace_nmext |
Replacement of @NMEXT tag |
replace_omega |
Replacement of @OMEGA tag |
replace_path |
Replacement of @PATH tag |
replace_pk_pred |
Replace @PK and @PRED tags |
replace_prior |
Replacement of @PRIOR tag |
replace_problem |
Replacement of @PROB1 and @PROB2 tags |
replace_purpose |
Replacement of @PURPOSE tag |
replace_sigma |
Replacement of @SIGMA tag |
replace_subroutine |
Replacement of @SUBROUTINE tag |
replace_table |
Replace @TABLE tag |
replace_tags |
Replace $TAGs tag |
replace_task |
Replace @TASK tag |
replace_theta |
Replacement of @THETA tag |
resources |
Load resource files |
run_app |
Run the Shiny Application |
tenvars |
Format variables by lines of 10. |