Gene Regulatory Network Inference with Bc3net

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Documentation for package ‘bc3net’ version 1.0.4

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bc3net-package BC3NET Gene Regulatory network Inference
bc3net Bc3net gene regulatory network inference
c3mtc 'c3mtc' gene regulatory network inference using c3net with multiple testing correction procedure
enrichment Function that performs a functional enrichment analysis based on a one-sided Fisher's exact teset (hypergeometric test).
exanet Example gene regulatory network for testing purposes only
exgensets Example gene sets defined from the CPDB database
expmat Test gene expression dataset
getgcc Extracting the giant connected component from an igraph object
gpea Gene pair enrichment analysis (GPEA)
mimwrap Wrapper function for mutual information matrix estimators