General Utility Functions for Analysis of Clinical Data

---

Documentation for package ‘clinUtils’ version 0.2.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

checkVarInData	Check if specified variables are in the data. If they are not, they are removed from specified variables and a message is printed.
clinColors	Colors of 'clinUtils'
clinLinetypes	Linetypes of 'clinUtils'
clinShapes	Shapes of 'clinUtils'
clinShapesText	Shapes of 'clinUtils' as text
clinUtils-palette	Parameters for all palette functions for clinical visualizations.
colorPaletteNRIND	Color palette for a standard CDISC Normal/Reference Range Indicator.
compareDiff	Get differences between two data.frames
compareTables	Compare tables
comparisonTables-common-args	General parameters used for the comparison table functionality
convertToDatatable	Convert to data.table
convertToDateTime	Convert character vector to date/time object
dataADaMCDISCP01	Example of ADaM datasets from the CDISC original Pilot 01 study
dataSDTMCDISCP01	Example of SDTM datasets from the CDISC original Pilot 01 study
exportDiffData	Export the 'diff.data' object from 'compareDiff' to a user-friendly format
formatDetailsComparison	Format details comparison
formatDTBarVar	Format a variable in a 'datatable' as a barplot.
formatLabel	Concatenate and format text strings to a label
formatLabelChunk	Concatenate and format text strings to a chunk label
formatLongLabel	Format a variable with long labels
formatTableLabel	Concatenate and format text strings to a label of a table
formatVarForPlotLabel	Format parameter variable to be displayed in the labels of a plot
getClinDT	Create an interactive table to display clinical data
getClinDTButtons	Get a default set of buttons to be included in the interactive table for clinical data.
getColorPalette	Get a color palette for clinical visualizations.
getLabelParamcd	Get label for a parameter code
getLabelVar	Get label for a variable of the dataset
getLabelVars	Get label of the variables in SAS dataset(s)
getLinetypePalette	Get a linetype palette for clinical visualizations.
getPaletteCDISC	Get standard palette for typical CDISC variables.
getSetDiff	Get additions/removals
getShapePalette	Get a shape palette for clinical visualizations.
knitPrintListObjects	Include a list of objects in a knitr document
knitPrintListPlots	Include a list of plots in a knitr document
loadDataADaMSDTM	Load data from ADaM/SDTM file(s).
mergeDiffWithData	Merge the 'diff.data' object from 'compareDiff' with the original 'newData' or 'oldData'.
mergeInputDiff	Custom merge of difference data with input data
reorderColumns	Function for reordering columns
roundHalfUp	Round a number with 'rounding up' strategy for rounding off a 5
roundHalfUpTextFormat	Round a number with 'round-up' strategy for rounding off a 5 in text format
shapePaletteNRIND	Shape palette for a standard CDISC Normal/Reference Range Indicator.
simpleCap	Capitalize the first letter of a word/sentence.