Spatial Simulation and Scale-Dependent Analysis of Biodiversity Changes

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Documentation for package ‘mobsim’ version 0.3.1

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

abund_rect	--- Get local species abundance distribution
community	Create spatial community object
community_to_sad	Get species abundance distribution from community object
dist_decay	Distance decay of similarity
dist_decay_quadrats	Distance decay of similarity with user-defined quadrats
divar	Diversity-area relationships
div_rand_rect	Distribution of local diversity indices
div_rect	Get local diversity indices
plot.community	Plot spatial community object
plot.dist_decay	Plot distance decay of similarity
plot.divar	--- Plot diversity-area relationships
plot.sad	Plot species abundance distributions
plot.spec_sample_curve	Plot species sampling curves
rare_curve	Species rarefaction curve
rThomas_rcpp	Thomas process individual distribution simulation for one species
sample_quadrats	Plot-based samples from a spatially-explicit census
sampling_grids	Creates square quadrats aligned on a regular grid
sampling_one_quadrat	Creates one square quadrat randomly located in the landscape
sampling_random_bruteforce	Creates coordinates (lower left corner of a quadrat) randomly distributed but without overlapping each other
sampling_random_overlap	Creates coordinates (lower left corner of a quadrat) randomly distributed that may overlap each other
sampling_random_spatstat	Creates coordinates (lower left corner of a quadrat) randomly distributed but without overlapping each other
sampling_transects	Creates square quadrats aligned along a transect
sim_poisson_community	Simulate community with random spatial positions.
sim_poisson_coords	Simulate random spatial coordinates
sim_sad	Simulate species abundance distributions
sim_thomas_community	Simulate community with clumped spatial positions.
sim_thomas_coords	Simulate clumped spatial coordinates
spec_sample	Sample species richness
spec_sample_curve	Non-spatial and spatially-explicit species sampling curves
summary.community	Print summary of spatial community object
summary.sad	Print summary of species abundance distribution object