Utility Functions, Datasets and Extended Examples for Survival Analysis

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Documentation for package ‘biostat3’ version 0.1.9

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

biostat3-package	Utility Functions, Datasets and Extended Examples for Survival Analysis
addIndicators	Utility to add indicators from a data-frame based on a formula.
as.data.frame.coxphHaz	Smoothed hazard estimates for 'coxph'
as.data.frame.coxphHazList	Smoothed hazard estimates for 'coxph'
as.data.frame.muhaz	Formula wrapper for the 'muhaz' function from the 'muhaz' package.
as.data.frame.muhazList	Formula wrapper for the 'muhaz' function from the 'muhaz' package.
biostat3	Utility Functions, Datasets and Extended Examples for Survival Analysis
brv	Bereavement dataset
colon	Colon cancer dataset
colon_sample	Sample from the 'colon' dataset used for teaching.
coxphHaz	Smoothed hazard estimates for 'coxph'
diet	Diet data set
eform	Calculate the exponential form for coefficients and their confidence intervals using either profile likelihood-based or Wald-based confidence intervals.
eform.default	Calculate the exponential form for coefficients and their confidence intervals using either profile likelihood-based or Wald-based confidence intervals.
format_perc	Utility functions for the 'biostat3' package
irr	Calculate the exponential form for coefficients and their confidence intervals using either profile likelihood-based or Wald-based confidence intervals.
lifetab	Create cohort life table
lifetab2	Formula wrapper for 'lifetab' from the 'KMsurv' package.
lincom	Linear combination of regression parameters.
lines.coxphHazList	Smoothed hazard estimates for 'coxph'
lines.lifetab2	Formula wrapper for 'lifetab' from the 'KMsurv' package.
lines.muhaz2	Formula wrapper for the 'muhaz' function from the 'muhaz' package.
lines.muhazList	Formula wrapper for the 'muhaz' function from the 'muhaz' package.
melanoma	Melanoma cancer dataset
muhaz2	Formula wrapper for the 'muhaz' function from the 'muhaz' package.
or	Calculate the exponential form for coefficients and their confidence intervals using either profile likelihood-based or Wald-based confidence intervals.
plot.coxphHaz	Smoothed hazard estimates for 'coxph'
plot.coxphHazList	Smoothed hazard estimates for 'coxph'
plot.lifetab2	Formula wrapper for 'lifetab' from the 'KMsurv' package.
plot.muhaz2	Formula wrapper for the 'muhaz' function from the 'muhaz' package.
plot.muhazList	Formula wrapper for the 'muhaz' function from the 'muhaz' package.
plot.smoothHaz	Simple implementation for kernel density smoothing of the Nelson-Aalen estimator.
poisson.ci	Exact Poisson confidence intervals.
popmort	popmort dataset, with population-based mortality rates
print.coxphHaz	Smoothed hazard estimates for 'coxph'
smoothHaz	Simple implementation for kernel density smoothing of the Nelson-Aalen estimator.
summary.muhazList	Formula wrapper for the 'muhaz' function from the 'muhaz' package.
survPHplot	Plot to assess non-proportionality
survRate	Describe rates
updateList	Utility functions for the 'biostat3' package
year	Convert a 'Date' vector to a numeric vector