A-class |
Class for the A set of the BAM diagram |
adj_mat |
adj_mat: Function to compute the adjacency matrix of an area. |
bam |
Class 'bam' digram |
bam-class |
Class 'bam' digram |
bam-method |
Predict method of the package 'bamm'. |
bam_clusters |
bam_clusters: Function to estimate the connectivity of suitable areas |
bam_sim |
bam_sim: Simulate dispersal dynamics using the set B of the BAM framework. |
bam_ssim |
bam_ssim: Simulate dispersal dynamics using the set B of the BAM framework. |
biodiversity_index |
Class 'bioindex' |
biodiversity_index_sparse |
Class 'bioindex_sparse' |
bioindex |
Class 'bioindex' |
bioindex-class |
Class 'bioindex' |
bioindex_sparse |
Class 'bioindex_sparse' |
bioindex_sparse-class |
Class 'bioindex_sparse' |
community-class |
Class 'community_sim' digram |
community_bam |
Class 'community_sim' digram |
community_sim |
community_bam: Community 'bamm' |
community_sim-class |
Class 'community_sim' digram |
coordinates-class |
S4 classes to organize data and results of 'bamm' objects |
csd |
Class 'csd' |
csd-class |
Class 'csd' |
csd_estimate |
csd_estimate: Estimate the connectivity suitability and dispersal plot |
csim2pam |
csim2pam: Converts community simulation to a Presence Absence Matrix (PAM) |
diversityrange |
Class 'diversity_range' |
diversity_range |
Class 'diversity_range' |
diversity_range-class |
Class 'diversity_range' |
diversity_range_analysis |
range_diversity_analysis: diversity analysis |
eigen_bam |
eigen_bam: Compute the Eigen system of two bam objects |
g_area |
S4 classes to organize data and results of 'bamm' objects |
g_area-class |
S4 classes to organize data and results of 'bamm' objects |
jaccard |
jaccard: Estimates the Jaccard index for comparing two binary maps |
leaflet |
Class 'leaflet' leaflet |
leaflet-class |
Class 'leaflet' leaflet |
M-class |
Class for the M set of the 'bamm' diagram |
model2sparse |
model2sparse: Converts a niche model into a diagonal sparse matrix |
models2pam |
models2pam: Converts binary rasters to a PAM |
null_dispersion_field_distribution |
null_dispersion_field_distribution: Null distribution of the dispersion field |
occs2sparse |
occs2sparse: Converts occurrence data into a sparse matrix object |
PAM |
Class 'pam' Presence-Absence Matrix |
pam |
Class 'pam' Presence-Absence Matrix |
pam-class |
Class 'pam' Presence-Absence Matrix |
pam2bioindex |
pam2bioindex: PAM to biodiversity index |
pam2richness |
pam2richness: Converts Presence Absence Matrix (pam object) to richness raster |
permute_pam |
permute_pam: Function to permute a Presence-Absence-Matrix. |
plot-method |
Plot method for objects of class diversity_range 'bamm'. |
predict |
Predict method of the package 'bamm'. |
predict-method |
Predict method of the package 'bamm'. |
sdm_sim |
sdm_sim: Simulate single species dispersal dynamics using the BAM framework. |
setA |
Class for the A set of the BAM diagram |
setA-class |
Class for the A set of the BAM diagram |
setM |
Class for the M set of the 'bamm' diagram |
setM-class |
Class for the M set of the 'bamm' diagram |
shape2Grid |
shape2Grid: Function to create a grid given a spatial polygon |
show-method |
Show information in setA class 'bamm'. |
sim2Animation |
sim2Animation: Animate BAM simulation object. |
sim2Raster |
sim2Raster: Convert a BAM simulation object to RasterStack |