Calculation of Log2 Counts per Million Cutoff from ERCC Controls


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Documentation for package ‘CpmERCCutoff’ version 1.0.0

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exp_input A data frame of expected ERCC1 and ERCC2 ratios
getLowLcpmCutoff Function to empirically determine a log2 CPM cutoff based on ERCC RNA spike-in
mta_dta A data frame containing sample-level ERCC meta data
obs_input A data frame of observed spike in ERCC normalized LCPM data
plot.empLCPM Plot the empirically derived LCPM cutoff
print.empLCPM Print the empirically derived LCPM cutoff results
summary.empLCPM Summarizing the empirically derived LCPM cutoff