Differential Expression Analysis Using a Bottom-Up Model

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Documentation for package ‘denoiSeq’ version 0.1.1

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

denoiseq	Differential expression analysis using a bottom-up model
ERCC	ERCC dataset
getSamplesOf	Get posterior samples of a parameter
readsData	An S4 class to represent summarised counts and the output of Bayesian inference.
results	Compute the test statistic
setInitValues	Generic for altering the initValues slot
setInitValues-method	Generic for altering the initValues slot
setReplicates	Generic for the altering setReplicates slot.
setReplicates-method	Generic for the altering setReplicates slot.
setStepSizes	Generic for altering the stepSizes slot.
setStepSizes-method	Generic for altering the stepSizes slot.
simdat	simulated data
tunedStepSize	Get values of the tuned step sizes.