An S4 Lattice-Based Package for the Representation of Multivariate Data

Documentation for package ‘adegraphics’ version 1.0-21

Help Pages

Graphical objects for ade4 functions (and more)

-- A --

add.ADEg	Superpose an new 'ADEg' graph to the previous ones plotted
add.ADEg-method	Class 'ADEg'
add.ADEg-methods	Superpose an new 'ADEg' graph to the previous ones plotted
addhist	Adds histograms and density lines against a bi-dimensional graphics.
addhist-method	Adds histograms and density lines against a bi-dimensional graphics.
addhist-methods	Adds histograms and density lines against a bi-dimensional graphics.
addline	Adds lines on graphics.
addline-method	Adds lines on graphics.
addline-methods	Adds lines on graphics.
addpoint	Adds points on graphics.
addpoint-method	Adds points on graphics.
addpoint-methods	Adds points on graphics.
addsegment	Adds segments on graphics.
addsegment-method	Adds segments on graphics.
addsegment-methods	Adds segments on graphics.
addtext	Adds labels on graphics.
addtext-method	Adds labels on graphics.
addtext-methods	Adds labels on graphics.
ADEg	Class 'ADEg'
ADEg-class	Class 'ADEg'
ADEg.C1	Class 'ADEg.C1'
ADEg.C1-class	Class 'ADEg.C1'
adeg.panel.edges	Panel functions for adding graphs.
adeg.panel.hist	Panel function for adding histograms.
adeg.panel.join	Panel function for joining lines.
adeg.panel.label	Panel function for adding labels.
adeg.panel.nb	Panel functions for adding graphs.
adeg.panel.Spatial	Panel function for adding spatial objects.
adeg.panel.values	Panel function drawing a third variable into a two-dimensional scatterplot
ADEg.S1	Class 'ADEg.S1'
ADEg.S1-class	Class 'ADEg.S1'
ADEg.S2	Class 'ADEg.S2'
ADEg.S2-class	Class 'ADEg.S2'
ADEg.T	Class 'ADEg.T'
ADEg.T-class	Class 'ADEg.T'
ADEg.Tr	Class '"ADEg.Tr"'
ADEg.Tr-class	Class '"ADEg.Tr"'
adegpar	Handling ADEg graphical parameters
adegraphics	Graphical objects for ade4 functions (and more)
ADEgS	Creation of 'ADEgS' objects
ADEgS-class	Class '"ADEgS"'

-- B --

biplot	Methods to display the outputs of an analysis performed with 'ade4'
biplot.dudi	Methods to display the outputs of an analysis performed with 'ade4'

-- C --

C1.barchart	Class 'C1.barchart'
C1.barchart-class	Class 'C1.barchart'
C1.curve	Class 'C1.curve'
C1.curve-class	Class 'C1.curve'
C1.curves	Class 'C1.curve'
C1.curves-class	Class 'C1.curve'
C1.density	Class 'C1.density'
C1.density-class	Class 'C1.density'
C1.dotplot	Class 'C1.dotplot'
C1.dotplot-class	Class 'C1.dotplot'
C1.gauss	Class 'C1.gauss'
C1.gauss-class	Class 'C1.gauss'
C1.hist	Class 'C1.hist'
C1.hist-class	Class 'C1.hist'
C1.interval	Class 'C1.interval'
C1.interval-class	Class 'C1.interval'
cbindADEg	Combine 'ADEg' objects by columns or rows
cbindADEg-method	Combine 'ADEg' objects by columns or rows
cbindADEg-methods	Combine 'ADEg' objects by columns or rows
changelatticetheme	Change the 'lattice' theme used for 'adegraphics'

-- G --

getcall	Method for 'ADEg' and 'ADEgS' objects
getcall-method	Class 'ADEg'
getcall-method	Class '"ADEgS"'
getcall-methods	Method for 'ADEg' and 'ADEgS' objects
getgraphics	Class '"ADEgS"'
getgraphics-method	Class '"ADEgS"'
getlatticecall	Class 'ADEg'
getlatticecall-method	Class 'ADEg'
getparameters	Class 'ADEg'
getparameters-method	Class 'ADEg'
getpositions	Class '"ADEgS"'
getpositions-method	Class '"ADEgS"'
getstats	Class 'ADEg'
getstats-method	Class 'ADEg'
getstats-methods	Class 'ADEg'
gettrellis	Class 'ADEg'
gettrellis-method	Class 'ADEg'
gettrellis-method	Class 'ADEg.C1'
gettrellis-method	Class 'ADEg.S1'
gettrellis-method	Class 'ADEg.S2'
gettrellis-method	Class 'ADEg.T'
gettrellis-method	Class '"ADEg.Tr"'
gettrellis-methods	Class 'ADEg'

-- I --

insert	Insert a graphic into an existing one
insert-method	Insert a graphic into an existing one
insert-methods	Insert a graphic into an existing one

-- K --

kplot	Methods to display the outputs of an analysis performed with 'ade4'
kplot.foucart	Methods to display the outputs of an analysis performed with 'ade4'
kplot.mbpcaiv	Methods to display the outputs of an analysis performed with 'ade4'
kplot.mcoa	Methods to display the outputs of an analysis performed with 'ade4'
kplot.mfa	Methods to display the outputs of an analysis performed with 'ade4'
kplot.pta	Methods to display the outputs of an analysis performed with 'ade4'
kplot.sepan	Methods to display the outputs of an analysis performed with 'ade4'
kplot.statis	Methods to display the outputs of an analysis performed with 'ade4'
kplotsepan.coa	Methods to display the outputs of an analysis performed with 'ade4'

-- L --

layout2position	Transform a layout matrix into a position one
length-method	Class '"ADEgS"'

-- N --

names-method	Class '"ADEgS"'
names<--method	Class '"ADEgS"'

-- P --

panel	Methods 'panel' for 'ADEg' objects
panel-method	Class 'C1.barchart'
panel-method	Class 'C1.curve'
panel-method	Class 'C1.density'
panel-method	Class 'C1.dotplot'
panel-method	Class 'C1.gauss'
panel-method	Class 'C1.hist'
panel-method	Class 'C1.interval'
panel-method	Class 'S1.boxplot'
panel-method	Class 'S1.class'
panel-method	Class 'S1.distri'
panel-method	Class 'S1.label'
panel-method	Class 'S1.match'
panel-method	Class 'S2.arrow'
panel-method	Class 'S2.class'
panel-method	Class 'S2.corcircle'
panel-method	Class 'S2.density'
panel-method	Class 'S2.distri'
panel-method	Class 'S2.image'
panel-method	Class 'S2.label'
panel-method	Class 'S2.logo'
panel-method	Class 'S2.match'
panel-method	Class 'S2.traject'
panel-method	Class 'S2.value'
panel-method	Class 'T.cont'
panel-method	Class 'T.image'
panel-method	Class 'T.value'
panel-method	Class 'Tr.class'
panel-method	Class 'Tr.label'
panel-method	Class 'Tr.match'
panel-method	Class 'Tr.traject'
panel-methods	Methods 'panel' for 'ADEg' objects
panelbase	Class 'ADEg'
panelbase-method	Class 'ADEg'
panelbase-method	Class 'ADEg.C1'
panelbase-method	Class 'ADEg.S1'
panelbase-method	Class 'ADEg.S2'
panelbase-method	Class 'ADEg.T'
panelbase-method	Class '"ADEg.Tr"'
panelbase-methods	Class 'ADEg'
plot	Methods to display the outputs of an analysis performed with 'ade4'
plot-method	Class 'ADEg'
plot-method	Class '"ADEgS"'
plot.acm	Methods to display the outputs of an analysis performed with 'ade4'
plot.bcaloocv	Methods to display the outputs of an analysis performed with 'ade4'
plot.betcoi	Methods to display the outputs of an analysis performed with 'ade4'
plot.betdpcoa	Methods to display the outputs of an analysis performed with 'ade4'
plot.betrlq	Methods to display the outputs of an analysis performed with 'ade4'
plot.between	Methods to display the outputs of an analysis performed with 'ade4'
plot.betwitdpcoa	Methods to display the outputs of an analysis performed with 'ade4'
plot.coinertia	Methods to display the outputs of an analysis performed with 'ade4'
plot.discloocv	Methods to display the outputs of an analysis performed with 'ade4'
plot.discrimin	Methods to display the outputs of an analysis performed with 'ade4'
plot.dpcoa	Methods to display the outputs of an analysis performed with 'ade4'
plot.fca	Methods to display the outputs of an analysis performed with 'ade4'
plot.foucart	Methods to display the outputs of an analysis performed with 'ade4'
plot.inertia	Display the decomposition of inertia which measure the contributions of rows/columns in mutivariate methods
plot.krandboot	Methods to display the outputs of an analysis performed with 'ade4'
plot.krandxval	Methods to display the outputs of an analysis performed with 'ade4'
plot.mcoa	Methods to display the outputs of an analysis performed with 'ade4'
plot.mfa	Methods to display the outputs of an analysis performed with 'ade4'
plot.multiblock	Methods to display the outputs of an analysis performed with 'ade4'
plot.multispati	Methods to display the outputs of an analysis performed with 'ade4'
plot.niche	Methods to display the outputs of an analysis performed with 'ade4'
plot.pcaiv	Methods to display the outputs of an analysis performed with 'ade4'
plot.procuste	Methods to display the outputs of an analysis performed with 'ade4'
plot.pta	Methods to display the outputs of an analysis performed with 'ade4'
plot.randboot	Methods to display the outputs of an analysis performed with 'ade4'
plot.randxval	Methods to display the outputs of an analysis performed with 'ade4'
plot.rlq	Methods to display the outputs of an analysis performed with 'ade4'
plot.sepan	Methods to display the outputs of an analysis performed with 'ade4'
plot.statis	Methods to display the outputs of an analysis performed with 'ade4'
plot.witcoi	Methods to display the outputs of an analysis performed with 'ade4'
plot.witdpcoa	Methods to display the outputs of an analysis performed with 'ade4'
plot.within	Methods to display the outputs of an analysis performed with 'ade4'
plot.witrlq	Methods to display the outputs of an analysis performed with 'ade4'
plotEig	Plot a barchart of eigen values
prepare	Methods 'prepare' for 'ADEg' objects
prepare-method	Class 'ADEg.C1'
prepare-method	Class 'ADEg.S1'
prepare-method	Class 'ADEg.S2'
prepare-method	Class 'ADEg.T'
prepare-method	Class '"ADEg.Tr"'
prepare-method	Class 'C1.barchart'
prepare-method	Class 'C1.curve'
prepare-method	Class 'C1.density'
prepare-method	Class 'C1.dotplot'
prepare-method	Class 'C1.gauss'
prepare-method	Class 'C1.hist'
prepare-method	Class 'C1.interval'
prepare-method	Class 'S1.boxplot'
prepare-method	Class 'S1.class'
prepare-method	Class 'S1.distri'
prepare-method	Class 'S1.label'
prepare-method	Class 'S1.match'
prepare-method	Class 'S2.arrow'
prepare-method	Class 'S2.class'
prepare-method	Class 'S2.corcircle'
prepare-method	Class 'S2.density'
prepare-method	Class 'S2.distri'
prepare-method	Class 'S2.image'
prepare-method	Class 'S2.label'
prepare-method	Class 'S2.logo'
prepare-method	Class 'S2.match'
prepare-method	Class 'S2.traject'
prepare-method	Class 'S2.value'
prepare-method	Class 'T.image'
prepare-method	Class 'T.value'
prepare-method	Class 'Tr.class'
prepare-method	Class 'Tr.label'
prepare-method	Class 'Tr.match'
prepare-method	Class 'Tr.traject'
prepare-methods	Methods 'prepare' for 'ADEg' objects
print-method	Class 'ADEg'
print-method	Class '"ADEgS"'
printSuperpose-method	Class 'ADEg'

-- R --

rbindADEg	Combine 'ADEg' objects by columns or rows
rbindADEg-method	Combine 'ADEg' objects by columns or rows
rbindADEg-methods	Combine 'ADEg' objects by columns or rows

-- S --

s.arrow	2-D scatter plot with arrows
s.class	2-D scatter plot with a partition in classes (levels of a factor)
s.corcircle	Correlation circle
s.density	2-D scatter plot with kernel density estimation
s.distri	2-D scatter plot with means/standard deviations computed using an external table of weights
s.image	2-D scatter plot with loess estimation of an additional numeric score (levelplot)
s.label	2-D scatter plot with labels
s.logo	2-D scatter plot with logos (bitmap objects)
s.match	2-D scatter plot of the matching between two sets of coordinates
s.Spatial	Mapping of a Spatial* object
s.traject	2-D scatter plot with trajectories
s.value	2-D scatter plot with proportional symbols (bubble plot)
S1.boxplot	Class 'S1.boxplot'
S1.boxplot-class	Class 'S1.boxplot'
S1.class	Class 'S1.class'
S1.class-class	Class 'S1.class'
S1.distri	Class 'S1.distri'
S1.distri-class	Class 'S1.distri'
S1.label	Class 'S1.label'
S1.label-class	Class 'S1.label'
S1.match	Class 'S1.match'
S1.match-class	Class 'S1.match'
s1d.barchart	1-D plot of a numeric score by bars
s1d.boxplot	1-D box plot of a numeric score partitioned in classes (levels of a factor)
s1d.class	1-D plot of a numeric score partitioned in classes (levels of a factor)
s1d.curve	1-D plot of a numeric score linked by curves
s1d.curves	1-D plot of multiple scores linked by curves
s1d.density	1-D plot of a numeric score by density curves
s1d.distri	1-D plot of a numeric score by means/standard deviations computed using an external table of weights
s1d.dotplot	1-D plot of a numeric score by dots
s1d.gauss	1-D plot of a numeric score by Gaussian curves
s1d.hist	1-D plot of a numeric score by bars
s1d.interval	1-D plot of the interval between two numeric scores
s1d.label	1-D plot of a numeric score with labels
s1d.match	1-D plot of the matching between two numeric scores
S2.arrow	Class 'S2.arrow'
S2.arrow-class	Class 'S2.arrow'
S2.class	Class 'S2.class'
S2.class-class	Class 'S2.class'
S2.corcircle	Class 'S2.corcircle'
S2.corcircle-class	Class 'S2.corcircle'
S2.density	Class 'S2.density'
S2.density-class	Class 'S2.density'
S2.distri	Class 'S2.distri'
S2.distri-class	Class 'S2.distri'
S2.image	Class 'S2.image'
S2.image-class	Class 'S2.image'
S2.label	Class 'S2.label'
S2.label-class	Class 'S2.label'
S2.logo	Class 'S2.logo'
S2.logo-class	Class 'S2.logo'
S2.match	Class 'S2.match'
S2.match-class	Class 'S2.match'
S2.traject	Class 'S2.traject'
S2.traject-class	Class 'S2.traject'
S2.value	Class 'S2.value'
S2.value-class	Class 'S2.value'
scatter	Methods to display the outputs of an analysis performed with 'ade4'
scatter.coa	Methods to display the outputs of an analysis performed with 'ade4'
scatter.dudi	Methods to display the outputs of an analysis performed with 'ade4'
scatter.nipals	Methods to display the outputs of an analysis performed with 'ade4'
scatter.pco	Methods to display the outputs of an analysis performed with 'ade4'
score	Methods to display the outputs of an analysis performed with 'ade4'
score.acm	Methods to display the outputs of an analysis performed with 'ade4'
score.inertia	Display the decomposition of inertia which measure the contributions of rows/columns in mutivariate methods
score.mix	Methods to display the outputs of an analysis performed with 'ade4'
score.pca	Methods to display the outputs of an analysis performed with 'ade4'
screeplot	Methods to display the outputs of an analysis performed with 'ade4'
screeplot.dudi	Methods to display the outputs of an analysis performed with 'ade4'
setlatticecall-method	Class 'ADEg.C1'
setlatticecall-method	Class 'ADEg.S1'
setlatticecall-method	Class 'ADEg.S2'
setlatticecall-method	Class 'ADEg.T'
setlatticecall-method	Class '"ADEg.Tr"'
setlatticecall-method	Class 'S1.boxplot'
setlimits1D	Computes limits for 1D and 2D displays.
setlimits2D	Computes limits for 1D and 2D displays.
show-method	Class 'ADEg'
show-method	Class '"ADEgS"'
sortparamADEg	Sort a sequence of graphical parameters
sortparamADEgS	Sort a sequence of graphical parameters
superpose	Superpose two graphics
superpose-method	Superpose two graphics
superpose-methods	Superpose two graphics

-- T --

T.cont	Class 'T.cont'
T.cont-class	Class 'T.cont'
T.image	Class 'T.image'
T.image-class	Class 'T.image'
T.value	Class 'T.value'
T.value-class	Class 'T.value'
table.image	Heat map-like representation with colored cells
table.value	Heat map-like representation with proportional symbols
Tr.class	Class 'Tr.class'
Tr.class-class	Class 'Tr.class'
Tr.label	Class 'Tr.label'
Tr.label-class	Class 'Tr.label'
Tr.match	Class 'Tr.match'
Tr.match-class	Class 'Tr.match'
Tr.traject	Class 'Tr.traject'
Tr.traject-class	Class 'Tr.traject'
triangle.class	Ternary plot with a partition in classes (levels of a factor)
triangle.label	Ternary plot with labels
triangle.match	Ternary plot of the matching between two sets of coordinates
triangle.traject	Ternary plot with trajectories

-- U --

update,ADEg	Class 'ADEg'
update,ADEgS	Class '"ADEgS"'
update-method	Class 'ADEg'
update-method	Class '"ADEgS"'

-- Z --

zoom	Zoom in or out
zoom-method	Zoom in or out
zoom-methods	Zoom in or out

-- misc --

$-method	Class '"ADEgS"'
+-method	Superpose two graphics
+-methods	Superpose two graphics
[-method	Class '"ADEgS"'
[[-method	Class '"ADEgS"'
[[<--method	Class '"ADEgS"'
\S4method{+}{ADEg}	Superpose two graphics