An S4 Lattice-Based Package for the Representation of Multivariate Data


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Documentation for package ‘adegraphics’ version 1.0-15

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A B C G I K L N P R S T U Z misc

adegraphics-package Graphical objects for ade4 functions (and more)

-- A --

add.ADEg Superpose an new 'ADEg' graph to the previous ones plotted
add.ADEg-method Class 'ADEg'
add.ADEg-methods Superpose an new 'ADEg' graph to the previous ones plotted
addhist Adds histograms and density lines against a bi-dimensional graphics.
addhist-method Adds histograms and density lines against a bi-dimensional graphics.
addhist-methods Adds histograms and density lines against a bi-dimensional graphics.
addline Adds lines on graphics.
addline-method Adds lines on graphics.
addline-methods Adds lines on graphics.
addpoint Adds points on graphics.
addpoint-method Adds points on graphics.
addpoint-methods Adds points on graphics.
addsegment Adds segments on graphics.
addsegment-method Adds segments on graphics.
addsegment-methods Adds segments on graphics.
addtext Adds labels on graphics.
addtext-method Adds labels on graphics.
addtext-methods Adds labels on graphics.
ADEg Class 'ADEg'
ADEg-class Class 'ADEg'
ADEg.C1 Class 'ADEg.C1'
ADEg.C1-class Class 'ADEg.C1'
adeg.panel.edges Panel functions for adding graphs.
adeg.panel.hist Panel function for adding histograms.
adeg.panel.join Panel function for joining lines.
adeg.panel.label Panel function for adding labels.
adeg.panel.nb Panel functions for adding graphs.
adeg.panel.Spatial Panel function for adding spatial objects.
adeg.panel.values Panel function drawing a third variable into a two-dimensional scatterplot
ADEg.S1 Class 'ADEg.S1'
ADEg.S1-class Class 'ADEg.S1'
ADEg.S2 Class 'ADEg.S2'
ADEg.S2-class Class 'ADEg.S2'
ADEg.T Class 'ADEg.T'
ADEg.T-class Class 'ADEg.T'
ADEg.Tr Class '"ADEg.Tr"'
ADEg.Tr-class Class '"ADEg.Tr"'
adegpar Handling ADEg graphical parameters
adegraphics Graphical objects for ade4 functions (and more)
ADEgS Creation of 'ADEgS' objects
ADEgS-class Class '"ADEgS"'

-- B --

biplot Methods to display the outputs of an analysis performed with 'ade4'
biplot.dudi Methods to display the outputs of an analysis performed with 'ade4'

-- C --

C1.barchart Class 'C1.barchart'
C1.barchart-class Class 'C1.barchart'
C1.curve Class 'C1.curve'
C1.curve-class Class 'C1.curve'
C1.curves Class 'C1.curve'
C1.curves-class Class 'C1.curve'
C1.density Class 'C1.density'
C1.density-class Class 'C1.density'
C1.dotplot Class 'C1.dotplot'
C1.dotplot-class Class 'C1.dotplot'
C1.gauss Class 'C1.gauss'
C1.gauss-class Class 'C1.gauss'
C1.hist Class 'C1.hist'
C1.hist-class Class 'C1.hist'
C1.interval Class 'C1.interval'
C1.interval-class Class 'C1.interval'
cbindADEg Combine 'ADEg' objects by columns or rows
cbindADEg-method Combine 'ADEg' objects by columns or rows
cbindADEg-methods Combine 'ADEg' objects by columns or rows
changelatticetheme Change the 'lattice' theme used for 'adegraphics'

-- G --

getcall Method for 'ADEg' and 'ADEgS' objects
getcall-method Class 'ADEg'
getcall-method Class '"ADEgS"'
getcall-methods Method for 'ADEg' and 'ADEgS' objects
getgraphics Class '"ADEgS"'
getgraphics-method Class '"ADEgS"'
getlatticecall Class 'ADEg'
getlatticecall-method Class 'ADEg'
getparameters Class 'ADEg'
getparameters-method Class 'ADEg'
getpositions Class '"ADEgS"'
getpositions-method Class '"ADEgS"'
getstats Class 'ADEg'
getstats-method Class 'ADEg'
getstats-methods Class 'ADEg'
gettrellis Class 'ADEg'
gettrellis-method Class 'ADEg'
gettrellis-method Class 'ADEg.C1'
gettrellis-method Class 'ADEg.S1'
gettrellis-method Class 'ADEg.S2'
gettrellis-method Class 'ADEg.T'
gettrellis-method Class '"ADEg.Tr"'
gettrellis-methods Class 'ADEg'

-- I --

insert Insert a graphic into an existing one
insert-method Insert a graphic into an existing one
insert-methods Insert a graphic into an existing one

-- K --

kplot Methods to display the outputs of an analysis performed with 'ade4'
kplot.foucart Methods to display the outputs of an analysis performed with 'ade4'
kplot.mbpcaiv Methods to display the outputs of an analysis performed with 'ade4'
kplot.mcoa Methods to display the outputs of an analysis performed with 'ade4'
kplot.mfa Methods to display the outputs of an analysis performed with 'ade4'
kplot.pta Methods to display the outputs of an analysis performed with 'ade4'
kplot.sepan Methods to display the outputs of an analysis performed with 'ade4'
kplot.statis Methods to display the outputs of an analysis performed with 'ade4'
kplotsepan.coa Methods to display the outputs of an analysis performed with 'ade4'

-- L --

layout2position Transform a layout matrix into a position one
length-method Class '"ADEgS"'

-- N --

names-method Class '"ADEgS"'
names<--method Class '"ADEgS"'

-- P --

panel Methods 'panel' for 'ADEg' objects
panel-method Class 'C1.barchart'
panel-method Class 'C1.curve'
panel-method Class 'C1.density'
panel-method Class 'C1.dotplot'
panel-method Class 'C1.gauss'
panel-method Class 'C1.hist'
panel-method Class 'C1.interval'
panel-method Class 'S1.boxplot'
panel-method Class 'S1.class'
panel-method Class 'S1.distri'
panel-method Class 'S1.label'
panel-method Class 'S1.match'
panel-method Class 'S2.arrow'
panel-method Class 'S2.class'
panel-method Class 'S2.corcircle'
panel-method Class 'S2.density'
panel-method Class 'S2.distri'
panel-method Class 'S2.image'
panel-method Class 'S2.label'
panel-method Class 'S2.logo'
panel-method Class 'S2.match'
panel-method Class 'S2.traject'
panel-method Class 'S2.value'
panel-method Class 'T.cont'
panel-method Class 'T.image'
panel-method Class 'T.value'
panel-method Class 'Tr.class'
panel-method Class 'Tr.label'
panel-method Class 'Tr.match'
panel-method Class 'Tr.traject'
panel-methods Methods 'panel' for 'ADEg' objects
panelbase Class 'ADEg'
panelbase-method Class 'ADEg'
panelbase-method Class 'ADEg.C1'
panelbase-method Class 'ADEg.S1'
panelbase-method Class 'ADEg.S2'
panelbase-method Class 'ADEg.T'
panelbase-method Class '"ADEg.Tr"'
panelbase-methods Class 'ADEg'
plot Methods to display the outputs of an analysis performed with 'ade4'
plot-method Class 'ADEg'
plot-method Class '"ADEgS"'
plot.acm Methods to display the outputs of an analysis performed with 'ade4'
plot.betcoi Methods to display the outputs of an analysis performed with 'ade4'
plot.betdpcoa Methods to display the outputs of an analysis performed with 'ade4'
plot.betrlq Methods to display the outputs of an analysis performed with 'ade4'
plot.between Methods to display the outputs of an analysis performed with 'ade4'
plot.betwitdpcoa Methods to display the outputs of an analysis performed with 'ade4'
plot.coinertia Methods to display the outputs of an analysis performed with 'ade4'
plot.discrimin Methods to display the outputs of an analysis performed with 'ade4'
plot.dpcoa Methods to display the outputs of an analysis performed with 'ade4'
plot.fca Methods to display the outputs of an analysis performed with 'ade4'
plot.foucart Methods to display the outputs of an analysis performed with 'ade4'
plot.inertia Display the decomposition of inertia which measure the contributions of rows/columns in mutivariate methods
plot.krandboot Methods to display the outputs of an analysis performed with 'ade4'
plot.krandxval Methods to display the outputs of an analysis performed with 'ade4'
plot.mcoa Methods to display the outputs of an analysis performed with 'ade4'
plot.mfa Methods to display the outputs of an analysis performed with 'ade4'
plot.multiblock Methods to display the outputs of an analysis performed with 'ade4'
plot.multispati Methods to display the outputs of an analysis performed with 'ade4'
plot.niche Methods to display the outputs of an analysis performed with 'ade4'
plot.pcaiv Methods to display the outputs of an analysis performed with 'ade4'
plot.procuste Methods to display the outputs of an analysis performed with 'ade4'
plot.pta Methods to display the outputs of an analysis performed with 'ade4'
plot.randboot Methods to display the outputs of an analysis performed with 'ade4'
plot.randxval Methods to display the outputs of an analysis performed with 'ade4'
plot.rlq Methods to display the outputs of an analysis performed with 'ade4'
plot.sepan Methods to display the outputs of an analysis performed with 'ade4'
plot.statis Methods to display the outputs of an analysis performed with 'ade4'
plot.witcoi Methods to display the outputs of an analysis performed with 'ade4'
plot.witdpcoa Methods to display the outputs of an analysis performed with 'ade4'
plot.within Methods to display the outputs of an analysis performed with 'ade4'
plot.witrlq Methods to display the outputs of an analysis performed with 'ade4'
plotEig Plot a barchart of eigen values
prepare Methods 'prepare' for 'ADEg' objects
prepare-method Class 'ADEg.C1'
prepare-method Class 'ADEg.S1'
prepare-method Class 'ADEg.S2'
prepare-method Class 'ADEg.T'
prepare-method Class '"ADEg.Tr"'
prepare-method Class 'C1.barchart'
prepare-method Class 'C1.curve'
prepare-method Class 'C1.density'
prepare-method Class 'C1.dotplot'
prepare-method Class 'C1.gauss'
prepare-method Class 'C1.hist'
prepare-method Class 'C1.interval'
prepare-method Class 'S1.boxplot'
prepare-method Class 'S1.class'
prepare-method Class 'S1.distri'
prepare-method Class 'S1.label'
prepare-method Class 'S1.match'
prepare-method Class 'S2.arrow'
prepare-method Class 'S2.class'
prepare-method Class 'S2.corcircle'
prepare-method Class 'S2.density'
prepare-method Class 'S2.distri'
prepare-method Class 'S2.image'
prepare-method Class 'S2.label'
prepare-method Class 'S2.logo'
prepare-method Class 'S2.match'
prepare-method Class 'S2.traject'
prepare-method Class 'S2.value'
prepare-method Class 'T.image'
prepare-method Class 'T.value'
prepare-method Class 'Tr.class'
prepare-method Class 'Tr.label'
prepare-method Class 'Tr.match'
prepare-method Class 'Tr.traject'
prepare-methods Methods 'prepare' for 'ADEg' objects
print-method Class 'ADEg'
print-method Class '"ADEgS"'
printSuperpose-method Class 'ADEg'

-- R --

rbindADEg Combine 'ADEg' objects by columns or rows
rbindADEg-method Combine 'ADEg' objects by columns or rows
rbindADEg-methods Combine 'ADEg' objects by columns or rows

-- S --

s.arrow 2-D scatter plot with arrows
s.class 2-D scatter plot with a partition in classes (levels of a factor)
s.corcircle Correlation circle
s.density 2-D scatter plot with kernel density estimation
s.distri 2-D scatter plot with means/standard deviations computed using an external table of weights
s.image 2-D scatter plot with loess estimation of an additional numeric score (levelplot)
s.label 2-D scatter plot with labels
s.logo 2-D scatter plot with logos (bitmap objects)
s.match 2-D scatter plot of the matching between two sets of coordinates
s.Spatial Mapping of a Spatial* object
s.traject 2-D scatter plot with trajectories
s.value 2-D scatter plot with proportional symbols (bubble plot)
S1.boxplot Class 'S1.boxplot'
S1.boxplot-class Class 'S1.boxplot'
S1.class Class 'S1.class'
S1.class-class Class 'S1.class'
S1.distri Class 'S1.distri'
S1.distri-class Class 'S1.distri'
S1.label Class 'S1.label'
S1.label-class Class 'S1.label'
S1.match Class 'S1.match'
S1.match-class Class 'S1.match'
s1d.barchart 1-D plot of a numeric score by bars
s1d.boxplot 1-D box plot of a numeric score partitioned in classes (levels of a factor)
s1d.class 1-D plot of a numeric score partitioned in classes (levels of a factor)
s1d.curve 1-D plot of a numeric score linked by curves
s1d.curves 1-D plot of multiple scores linked by curves
s1d.density 1-D plot of a numeric score by density curves
s1d.distri 1-D plot of a numeric score by means/standard deviations computed using an external table of weights
s1d.dotplot 1-D plot of a numeric score by dots
s1d.gauss 1-D plot of a numeric score by Gaussian curves
s1d.hist 1-D plot of a numeric score by bars
s1d.interval 1-D plot of the interval between two numeric scores
s1d.label 1-D plot of a numeric score with labels
s1d.match 1-D plot of the matching between two numeric scores
S2.arrow Class 'S2.arrow'
S2.arrow-class Class 'S2.arrow'
S2.class Class 'S2.class'
S2.class-class Class 'S2.class'
S2.corcircle Class 'S2.corcircle'
S2.corcircle-class Class 'S2.corcircle'
S2.density Class 'S2.density'
S2.density-class Class 'S2.density'
S2.distri Class 'S2.distri'
S2.distri-class Class 'S2.distri'
S2.image Class 'S2.image'
S2.image-class Class 'S2.image'
S2.label Class 'S2.label'
S2.label-class Class 'S2.label'
S2.logo Class 'S2.logo'
S2.logo-class Class 'S2.logo'
S2.match Class 'S2.match'
S2.match-class Class 'S2.match'
S2.traject Class 'S2.traject'
S2.traject-class Class 'S2.traject'
S2.value Class 'S2.value'
S2.value-class Class 'S2.value'
scatter Methods to display the outputs of an analysis performed with 'ade4'
scatter.coa Methods to display the outputs of an analysis performed with 'ade4'
scatter.dudi Methods to display the outputs of an analysis performed with 'ade4'
scatter.nipals Methods to display the outputs of an analysis performed with 'ade4'
scatter.pco Methods to display the outputs of an analysis performed with 'ade4'
score Methods to display the outputs of an analysis performed with 'ade4'
score.acm Methods to display the outputs of an analysis performed with 'ade4'
score.inertia Display the decomposition of inertia which measure the contributions of rows/columns in mutivariate methods
score.mix Methods to display the outputs of an analysis performed with 'ade4'
score.pca Methods to display the outputs of an analysis performed with 'ade4'
screeplot Methods to display the outputs of an analysis performed with 'ade4'
screeplot.dudi Methods to display the outputs of an analysis performed with 'ade4'
setlatticecall-method Class 'ADEg.C1'
setlatticecall-method Class 'ADEg.S1'
setlatticecall-method Class 'ADEg.S2'
setlatticecall-method Class 'ADEg.T'
setlatticecall-method Class '"ADEg.Tr"'
setlatticecall-method Class 'S1.boxplot'
setlimits1D Computes limits for 1D and 2D displays.
setlimits2D Computes limits for 1D and 2D displays.
show-method Class 'ADEg'
show-method Class '"ADEgS"'
sortparamADEg Sort a sequence of graphical parameters
sortparamADEgS Sort a sequence of graphical parameters
superpose Superpose two graphics
superpose-method Superpose two graphics
superpose-methods Superpose two graphics

-- T --

T.cont Class 'T.cont'
T.cont-class Class 'T.cont'
T.image Class 'T.image'
T.image-class Class 'T.image'
T.value Class 'T.value'
T.value-class Class 'T.value'
table.image Heat map-like representation with colored cells
table.value Heat map-like representation with proportional symbols
Tr.class Class 'Tr.class'
Tr.class-class Class 'Tr.class'
Tr.label Class 'Tr.label'
Tr.label-class Class 'Tr.label'
Tr.match Class 'Tr.match'
Tr.match-class Class 'Tr.match'
Tr.traject Class 'Tr.traject'
Tr.traject-class Class 'Tr.traject'
triangle.class Ternary plot with a partition in classes (levels of a factor)
triangle.label Ternary plot with labels
triangle.match Ternary plot of the matching between two sets of coordinates
triangle.traject Ternary plot with trajectories

-- U --

update,ADEg Class 'ADEg'
update,ADEgS Class '"ADEgS"'
update-method Class 'ADEg'
update-method Class '"ADEgS"'

-- Z --

zoom Zoom in or out
zoom-method Zoom in or out
zoom-methods Zoom in or out

-- misc --

$-method Class '"ADEgS"'
+-method Superpose two graphics
+-methods Superpose two graphics
[-method Class '"ADEgS"'
[[-method Class '"ADEgS"'
[[<--method Class '"ADEgS"'
\S4method{+}{ADEg} Superpose two graphics