Distance Metrics for Trees Generated by Congreve and Lamsdell
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Documentation for package ‘CongreveLamsdell2016’ version 1.0.3
Help Pages
| clBootFreqPartitions | Congreve and Lamsdell tree distances |
| clBootFreqQuartets | Congreve and Lamsdell tree distances |
| clBootGcPartitions | Congreve and Lamsdell tree distances |
| clBootGcQuartets | Congreve and Lamsdell tree distances |
| clBremPartitions | Congreve and Lamsdell tree distances |
| clBremQuartets | Congreve and Lamsdell tree distances |
| clCI | Consistency indices |
| clColours | Default colours for analyses. |
| clInitializeTernaryQuarts | Initialize ternary plots for quartet plotting |
| clInitializeTernarySplits | Initialize ternary plots for quartet plotting |
| clJackFreqPartitions | Congreve and Lamsdell tree distances |
| clJackFreqQuartets | Congreve and Lamsdell tree distances |
| clJackGcPartitions | Congreve and Lamsdell tree distances |
| clJackGcQuartets | Congreve and Lamsdell tree distances |
| clMatrices | 100 simulated data matrices |
| clMkvPartitions | Congreve and Lamsdell tree distances |
| clMkvQuartets | Congreve and Lamsdell tree distances |
| clPhyDat | 100 simulated data matrices |
| clPlotAverageQuartets | Plot results |
| clPlotAverageSplits | Plot results |
| clPlotBestAverageSplits | Plot results |
| clPlotQuartets | Plot results |
| clPlotSplits | Plot results |
| clPlotTheseAverageQuartets | Plot results |
| clPlotTheseAverageSplits | Plot results |
| clPlotTheseBestAverageSplits | Plot results |
| clReferenceTree | Tree topology for matrix simulation |
| clResults | Congreve and Lamsdell tree distances |