Pathways Longitudinal and Differential Analysis in Metabolomics
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Documentation for package ‘phoenics’ version 0.3
Help Pages
| adjust_pval | Class pathwayRes |
| adjust_pval.pathwayRes | Class pathwayRes |
| design | Dataset "MTBLS422" |
| extract | Class pathwayRes |
| extract.pathwayRes | Class pathwayRes |
| from_ASICS_to_PHOENICS | Prepare quantification data from ASICS outputs |
| head | Class pathwayRes |
| head.pathwayRes | Class pathwayRes |
| MTBLS422 | Dataset "MTBLS422" |
| overlap_coefficient | Calculate overlap coefficient between pathways |
| pathwayRes | Class pathwayRes |
| pathways | Dataset "MTBLS422" |
| pathway_search | Query KEGG pathways for a given set of metabolites |
| plot.pathwayRes | Class pathwayRes |
| print.pathwayRes | Class pathwayRes |
| quantif | Dataset "MTBLS422" |
| summary.pathwayRes | Class pathwayRes |
| test_pathway | Pathway differential analysis based on longitudinal metabolomics data |