ADaM in R Asset Library

Documentation for package ‘admiral’ version 0.6.3

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-- A --

adae	Adverse Event Analysis Dataset
adcm	Concomitant Medication Analysis Dataset
adex	Exposure Analysis Dataset
adsl	Subject Level Analysis Dataset
advs	Vital Signs Analysis Dataset
ae_event	Pre-Defined Time-to-Event Source Objects
ae_gr1_event	Pre-Defined Time-to-Event Source Objects
ae_gr2_event	Pre-Defined Time-to-Event Source Objects
ae_gr35_event	Pre-Defined Time-to-Event Source Objects
ae_gr3_event	Pre-Defined Time-to-Event Source Objects
ae_gr4_event	Pre-Defined Time-to-Event Source Objects
ae_gr5_event	Pre-Defined Time-to-Event Source Objects
ae_ser_event	Pre-Defined Time-to-Event Source Objects
ae_sev_event	Pre-Defined Time-to-Event Source Objects
ae_wd_event	Pre-Defined Time-to-Event Source Objects
assert_character_scalar	Is an Argument a Character Scalar (String)?
assert_character_vector	Is an Argument a Character Vector?
assert_data_frame	Is an Argument a Data Frame?
assert_filter_cond	Is an Argument a Filter Condition?
assert_has_variables	Does a Dataset Contain All Required Variables?
assert_integer_scalar	Is an Argument an Integer Scalar?
assert_list_element	Is an Element of a List of Lists/Classes Fulfilling a Condition?
assert_list_of	Is an Argument a List of Objects of a Specific S3 Class?
assert_logical_scalar	Is an Argument a Logical Scalar (Boolean)?
assert_numeric_vector	Is an Argument a Numeric Vector?
assert_one_to_one	Is There a One to One Mapping between Variables?
assert_order_vars	Is an Argument a List of Order Variables?
assert_param_does_not_exist	Asserts That a Parameter Does Not Exist in the Dataset
assert_s3_class	Is an Argument an Object of a Specific S3 Class?
assert_symbol	Is an Argument a Symbol?
assert_unit	Asserts That a Parameter is Provided in the Expected Unit
assert_valid_queries	Verify if a Dataset Has the Required Format as Queries Dataset.
assert_vars	Is an Argument a List of Variables?
assert_varval_list	Is an Argument a Variable-Value List?

-- C --

call_derivation	Call a Single Derivation Multiple Times
censor_source	Create a 'censor_source' Object
compute_bmi	Compute Body Mass Index (BMI)
compute_bsa	Compute Body Surface Area (BSA)
compute_dtf	Derive the Date Imputation Flag
compute_duration	Derive Duration
compute_map	Compute Mean Arterial Pressure (MAP)
compute_qtc	Compute Corrected QT
compute_rr	Compute RR Interval From Heart Rate
compute_tmf	Derive the Time Imputation Flag
convert_blanks_to_na	Convert Blank Strings Into NAs
convert_blanks_to_na.character	Convert Blank Strings Into NAs
convert_blanks_to_na.data.frame	Convert Blank Strings Into NAs
convert_blanks_to_na.default	Convert Blank Strings Into NAs
convert_blanks_to_na.list	Convert Blank Strings Into NAs
convert_date_to_dtm	Convert a Date into a Datetime Object
convert_dtc_to_dt	Convert a Date Character Vector into a Date Object
convert_dtc_to_dtm	Convert a Date Character Vector into a Datetime Object

-- D --

dataset_vignette	Output a Dataset in a Vignette in the admiral Format
death_event	Pre-Defined Time-to-Event Source Objects
default_qtc_paramcd	Get Default Parameter Code for Corrected QT
derive_agegr_ema	Derive Age Groups
derive_agegr_fda	Derive Age Groups
derive_baseline	Derive Baseline
derive_derived_param	Adds a Parameter Computed from the Analysis Value of Other Parameters
derive_disposition_dt	Derive a Disposition Date
derive_disposition_reason	Derive a Disposition Reason at a Specific Timepoint
derive_disposition_status	Derive a Disposition Status at a Specific Timepoint
derive_extreme_flag	Add a Variable Flagging the First or Last Observation Within Each By Group
derive_last_dose	Derive Last Dose Date(-time)
derive_obs_number	Adds a Variable Numbering the Observations Within Each By Group
derive_params_exposure	Add an Aggregated Parameter and Derive the Associated Start and End Dates
derive_param_bmi	Adds a Parameter for BMI
derive_param_bsa	Adds a Parameter for BSA (Body Surface Area) Using the Specified Method
derive_param_doseint	Adds a Parameter for Dose Intensity
derive_param_exposure	Add an Aggregated Parameter and Derive the Associated Start and End Dates
derive_param_map	Adds a Parameter for Mean Arterial Pressure
derive_param_qtc	Adds a Parameter for Corrected QT
derive_param_rr	Adds a Parameter for Derived RR
derive_param_tte	Derive a Time-to-Event Parameter
derive_summary_records	Add New Records Within By Groups Using Aggregation Functions
derive_vars_aage	Derive Analysis Age
derive_vars_atc	Derive ATC Class Variables
derive_vars_disposition_reason	Derive a Disposition Reason at a Specific Timepoint
derive_vars_dt	Derive/Impute a Date from a Date Character Vector
derive_vars_dtm	Derive/Impute a Datetime from a Date Character Vector
derive_vars_dtm_to_dt	Derive Date Variables from Datetime Variables
derive_vars_dtm_to_tm	Derive Time Variables from Datetime Variables
derive_vars_duration	Derive Duration
derive_vars_dy	Derive Relative Day Variables
derive_vars_last_dose	Derive Last Dose
derive_vars_query	Derive Query Variables
derive_vars_suppqual	Join Supplementary Qualifier Variables into the Parent SDTM Domain
derive_vars_transposed	Derive Variables by Transposing and Merging a Second Dataset
derive_var_ady	Derive Analysis Study Day
derive_var_aendy	Derive Analysis End Relative Day
derive_var_agegr_ema	Derive Age Groups
derive_var_agegr_fda	Derive Age Groups
derive_var_age_years	Derive Age in Years
derive_var_anrind	Derive Reference Range Indicator
derive_var_astdy	Derive Analysis Start Relative Day
derive_var_atirel	Derive Time Relative to Reference
derive_var_base	Derive Baseline Variables
derive_var_basec	Derive BASEC Variable
derive_var_basetype	Derive BASETYPE Variable
derive_var_chg	Derive Change from Baseline
derive_var_disposition_dt	Derive a Disposition Date
derive_var_disposition_status	Derive a Disposition Status at a Specific Timepoint
derive_var_dthcaus	Derive Death Cause
derive_var_extreme_flag	Add a Variable Flagging the First or Last Observation Within Each By Group
derive_var_last_dose_amt	Derive Last Dose Amount
derive_var_last_dose_date	Derive Last Dose Date-Time
derive_var_last_dose_grp	Derive Last Dose with User-Defined Groupings
derive_var_lstalvdt	Derive Last Known Alive Date
derive_var_obs_number	Adds a Variable Numbering the Observations Within Each By Group
derive_var_ontrtfl	Derive On-Treatment Flag Variable
derive_var_pchg	Derive Percent Change from Baseline
derive_var_trtdurd	Derive Total Treatment Duration (Days)
derive_var_trtedtm	Derive Datetime of Last Exposure to Treatment
derive_var_trtsdtm	Derive Datetime of First Exposure to Treatment
derive_var_worst_flag	Adds a Variable Flagging the Maximal / Minimal Value Within a Group of Observations
derive_worst_flag	Adds a Variable Flagging the Maximal / Minimal Value Within a Group of Observations
dthcaus_source	Create a 'dthcaus_source' Object

-- E --

event_source	Create an 'event_source' Object
expect_dfs_equal	Expectation: Are Two Datasets Equal?
extend_source_datasets	Add By Groups to All Datasets if Necessary
extract_duplicate_records	Extract Duplicate Records
extract_unit	Extract Unit From Parameter Description
ex_single	Single Dose Exposure Dataset

-- F --

filter_date_sources	Select the First or Last Date from Several Sources
filter_extreme	Filter the First or Last Observation for Each By Group
filter_if	Optional Filter
format_eoxxstt_default	Default Format for Disposition Status
format_reason_default	Default Format for the Disposition Reason

-- G --

get_duplicates_dataset	Get Duplicate Records that Lead to a Prior Error
get_many_to_one_dataset	Get Many to One Values that Led to a Prior Error
get_one_to_many_dataset	Get One to Many Values that Led to a Prior Error

-- I --

impute_dtc

Impute Partial Date(-time) Portion of a "-DTC" Variable

-- L --

lastalive_censor	Pre-Defined Time-to-Event Source Objects
list_all_templates	List All Available ADaM Templates
lstalvdt_source	Create an 'lstalvdt_source' object

-- N --

negate_vars

Negate List of Variables

-- P --

params	Create a Set of Parameters
print.tte_source	Print 'tte_source' Objects

-- Q --

queries

Queries Dataset

-- S --

signal_duplicate_records	Signal Duplicate Records
suppress_warning	Suppress Specific Warnings

-- T --

tte_source

Create a 'tte_source' Object

-- U --

use_ad_template

Open an ADaM Template Script

-- V --

vars2chr

Turn a List of Quosures into a Character Vector

-- W --

warn_if_inconsistent_list	Warn If Two Lists are Inconsistent
warn_if_invalid_dtc	Warn If a Vector Contains Unknown Datetime Format
warn_if_vars_exist	Warn If a Variable Already Exists

-- misc --

+-method

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