Sparse Family and Selection Index

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Documentation for package ‘SFSI’ version 1.4

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

coef.LASSO	LASSO methods
coef.SGP	SGP methods
cov2cor2	Conversion of a covariance matrix to a distance/correlation matrix
cov2dist	Conversion of a covariance matrix to a distance/correlation matrix
fitBLUP	Fitting a Linear Mixed model to calculate BLUP
genCOV_xy	Wheat dataset
genCOV_yy	Wheat dataset
getGenCov	Pairwise Genetic Covariance
get_folds	Data partition into folds of the same size
LARS	Least Angle Regression to solve LASSO-type problems
M	Wheat dataset
multitrait.plot	Accuracy vs penalization from multi-trait SGP
net	Graphical Network
path.plot	Coefficients path plot
plot.net	Plotting a network
plot.SGP	Accuracy vs penalization plot
predict.LASSO	LASSO methods
predict.SGP	SGP methods
Prune	R-squared pruning
readBinary	Save/read binary files
read_SGP	Read and combine SGP outputs
read_summary	Read and combine SGP outputs
resCOV_yy	Wheat dataset
saveBinary	Save/read binary files
SGP	Sparse Genomic Prediction
SGP.CV	Sparse Genomic Prediction
solveEN	Coordinate Descent algorithm to solve Elastic-Net-type problems
summary.SGP	SGP methods
VI_E1	Wheat dataset
wheatHTP	Wheat dataset
X_E1	Wheat dataset
Y	Wheat dataset